Published November 18, 2024
| Version v0.13.1
Software
Open
ComputationalCryoEM/ASPIRE-Python: v0.13.1
Creators
- 1. Princeton University
- 2. KTH Royal Institute of Technology
- 3. OpenEye Scientific Software Inc
- 4. Columbia University
- 5. University of California, Irvine
- 6. Ariel University
- 7. Tel Aviv University
Description
ASPIRE v0.13.1 is patch release, adding optimizations, increasing GPU Common Lines acceleration, updating systems/platform and fixing several bugs.
This release provides the following features:
- CUDA Common Lines Matrix kernel (CLOrient3D)
- CUDA Estimate Initial Rotations kernel (CLSync3N)
- CUDA Euler angle to rotation matrix kernel(CLSync3N)
- Added internal common line class caching
- Improve default saving
overwrite
behavior - Adds
DiracBasis2D
andDiracBasis3D
Bug fixes:
Whiten
/PowerFilter
extremal values- Estimate shifts validation and patches
- Simulation
amplitude
/offset
resampling
Systems/CI Updates:
- Drop Python 3.8, add Python 3.12
- Improve CI GPU code coverage
tox
updates and minor linting updates- Restore
codecov
reporting - Extend
codecov
report to include GPU job - Windows specific conda environment (workaround MKL 2022 issues)
Files
ComputationalCryoEM/ASPIRE-Python-v0.13.1.zip
Files
(66.8 MB)
Name | Size | Download all |
---|---|---|
md5:317209c19bc0bd01ac6e8f774321a1fa
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66.8 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/ComputationalCryoEM/ASPIRE-Python/tree/v0.13.1 (URL)