Systematic dissection of tumor ecosystems at single-cell resolution across a thousand tumors of 30 cancer types
- 1. Korea Advanced Institute of Science and Technology
Description
This is the collection of codes and datasets described in the paper "Systematic dissection of tumor ecosystems at single-cell resolution across a thousand tumors of 30 cancer types"
This repository contains:
- The annotated NMF and scRNA-seq matrix in h5ad format
- Analysis codes used for analysis
- The weighted average of NMF cell states
The description for each item are as follows:
- Log-normalized scRNA-seq matrix files for each cell type: filename extensions with '*.xz'
- NMF module matrix files for each cell type: filename extensions with '*.gzip'
- Analysis codes: filename extensions with '*.R', '*.ipynb', '*.py', '*.sh', and '*.tar'
- The weighted average of each NMF cell states: 'NMF_weighted_average.csv'
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