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Published May 30, 2022 | Version v1
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First molecular phylogeny and species delimitation of West Palaearctic Pollenia (Diptera: Polleniidae)

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Szpila, Krzysztof, Piwczyński, Marcin, Glinkowski, Wojciech, Lutz, Lena, Akbarzadeh, Kamran, Baz, Arturo, Johnston, Nikolas P., Grzywacz, Andrzej (2023): First molecular phylogeny and species delimitation of West Palaearctic Pollenia (Diptera: Polleniidae). Zoological Journal of the Linnean Society 197 (1): 267-282, DOI: 10.1093/zoolinnean/zlac035, URL: http://dx.doi.org/10.1093/zoolinnean/zlac035

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urn:lsid:zoobank.org:pub:2AE1EF03-8E39-4457-82C7-123BA9359CDET
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urn:lsid:plazi.org:pub:1E68B0294F174A43F6669157FF8FFFB0

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Publication: 10.1038/nmeth.2109 (DOI)
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Figure: 10.5281/zenodo.7474081 (DOI)
Dataset: http://table.plazi.org/id/3E8729CF4F144A40F55D9596FB72FAFD (URL)
Figure: 10.5281/zenodo.7474083 (DOI)
Dataset: http://table.plazi.org/id/3E8729CF4F104A44F6C59192FEF3FEA5 (URL)
Dataset: http://table.plazi.org/id/3E8729CF4F1F4A4BF6F690E4FAB4FD8E (URL)

References

  • Anton E, Niederegger S, Beutel RG. 2011. Beetles and flies collected on pig carrion in an experimental setting in Thuringia and their forensic implications. Medical and Veterinary Entomology 25: 353-364.
  • Arnaldos MI, Romera E, Presa JJ, Luna A, Garcia MD. 2004. Studies on seasonal arthropod succession on carrion in the southeastern Iberian Peninsula. International Journal of Legal Medicine 118: 197-205.
  • Benbow ME, Lewis AJ, Tomberlin JK, Pechal JL. 2013. Seasonal necrophagous insect community assembly during vertebrate carrion decomposition. Journal of Medical Entomology 50: 440-450.
  • Borowiec ML. 2016. AMAS:a fast tool for alignment manipulation and computing of summary statistics. PeerJ 4: e1660.
  • Buenaventura E, Lloyd MW, Perilla Lopez JM, Gonzales VL, Thomas-Cabianca A, Dikow T. 2021. Protein-encoding ultraconserved elements provide a new phylogenomic perspective of Oestroidea flies (Diptera: Calyptratae). Systematic Entomology 46: 5-27.
  • Cerretti P , Stireman JO , Pape T , O'Hara JE , Marinho MAT, Rognes K, Grimaldi DA. 2017. First fossil of an oestroid fly (Diptera: Calyptratae: Oestroidea) and the dating of oestroid divergences, PLoS One 12: e01821011-24.
  • Cerretti P, Stireman JO, Badano D, Gisondi S, Rognes K, Giudice GL, Pape T. 2019. Reclustering the cluster flies (Diptera: Oestroidea, Polleniidae). Systematic Entomology 44: 957-972.
  • Collins RA, Boykin LM, Cruickshank RH, Armstrong KF. 2012. Barcoding's next top model: an evaluation of nucleotide substitution models for specimen identification, Methods in Ecology and EVolution 3: 457-465.
  • Darriba D, Taboada G, Doallo R, Posada D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9: 772. https://doi.org/10.1038/ nmeth.2109
  • Dellicour S, Flot J-F. 2018. The hitchhiker's guide to singlelocus species delimitation. Molecular Ecology Resources 18: 1234-1246.
  • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792-1797.
  • Edwards CA, Bohlen PJ. 1996. Biology and ecology of earthaeorms. London: Chapman and Hall.
  • El-Husseini MMM. 2019. Endo- or ecto-parasitism with the cluster fly, Pollenia dasypoda Portochisky [sic!] (Diptera: Calliphoridae), based on the diameter of its host body, the earthworm Allolobophora caligonosa (Sav.). Egyptian Journal of Biological Pest Control 29: 49.
  • Faulde M, Sobe D, Burghardt H, Wermter R. 2001. Hospital infestation by the cluster fly, Pollenia rudis sensu stricto Fabricius, 1794 (Diptera: Calliphoridae), and its possible role in transmission of bacterial pathogens in Germany. International Journal of Hygiene and EnVironmental Health 203: 201-204.
  • Feddern N, Amendt J, Schyma C, Jackowski C, Tschui J. 2018. A preliminary study about the spatiotemporal distribution of forensically important blow flies (Diptera: Calliphoridae) in the area of Bern, Switzerland. Forensic Science International 289: 57-66.
  • Ferrar P. 1987. A guide to the breeding habits and immature stages of Diptera Cyclorrhapha. Entomonograph 8: 1-907.
  • Flouri T, Jiao X, Rannala B, Yang Z. 2018. Species tree inference with BPP using genomic sequences and the multispecies coalescent. Molecular Biology and EVolution 35: 2585-2593.
  • Fujisawa T, Barraclough TG. 2013. Delimiting species using single-locus data and the generalized mixed yule coalescent approach: a revised method and evaluation on simulated data sets. Systematic Biology 62: 707-724.
  • Gisondi S, Rognes K, Badano D, Pape T, Cerretti P. 2020. The world Polleniidae (Diptera, Oestroidea): key to genera and checklist of species. ZooKeys 971: 105-155.
  • Gouy M, Guindon S, Gascuel O. 2010. SeaView v.4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and EVolution 27: 221-224.
  • Grunin KY. 1970. 108. Sem. Calliphoridae - Calliphoridy. In: Bei-Bienko GY, ed. Opredelitel nasekomykh eVropeiskoi chasti SSSR, V, dVukrylye, blokhi. Leningrad: Akademia Nauk SSSR, Zoologischeskiy Institut, 607-624.
  • Grzywacz A, Szpila K, Pape T. 2012. Egg morphology of nine species of Pollenia Robineau-Desvoidy, 1830 (Diptera: Calliphoridae).Microscopy Research and Technique 75: 955-967.
  • Grzywacz A, Wallman JF, Piwczynski M. 2017. To be or not to be a valid genus: the systematic position of Ophyra R.-D. revised (Diptera: Muscidae). Systematic Entomology 42: 714-723.
  • Grzywacz A, Trzeciak P, Wiegmann BW, Cassel BK, Pape T , Walczak K, Bystrowski C, Nelson L , Piwczynski M. 2021. Towards a new classification of Muscidae (Diptera): a comparison of hypotheses based on multiple molecular phylogenetic approaches. Systematic Entomology 46: 508-525.
  • Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52: 696-704.
  • Guindon S, Dufayard J-F, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology 59: 307-321.
  • Heath ACG, Marris JWM, Harris AC. 2004. A cluster fly, Pollenia pseudorudis Rognes, 1985 (Diptera: Calliphoridae): its history and pest status in New Zealand. Neae Zealand Journal of Zoology 31: 313-318.
  • Henry CS. 1994. Singing and cryptic speciation insects. Trends in Ecology and EVolution 9: 388-392.
  • Howlett BG, Davidson MM, Pattemore DE, Walker MK, Nelson WR. 2016. Seasonality of calliphorid and sarcophagid flies across Canterbury arable farms requiring pollinators. Neae Zealand Plant Protection 69: 290-295.
  • Hulley PE. 1978. The effect of temperature on male frons width in Musca domestica calleVa Walker and M.d. curViforceps Sacca and Rivosecchi (Diptera: Muscidae). Journal of the Entomological Society of South Africa 41: 265-274.
  • Huyse T, Poulin R, Theron A. 2005. Speciation in parasites: a population genetics approach. Trends in Parasitology 21: 469-475.
  • Hwang C, Turner BD. 2005. Spatial and temporal variability of necrophagous Diptera from urban to rural areas. Medical and Veterinary Entomology 19: 379-391.
  • Jedrzejewska-Szmek K, Zych M. 2013. Flower-visitor and pollen transport networks in a large city: structure and properties. Arthropod-Plant Interactions 7: 503-516.
  • Keilin D.1915. Recherches sur les larves de Dipteres Cyclorhaphes. Cycle evolutif de Pollenia rudis Fabr., parasite d ' Allolobophora chlorotica Sav. - Biologie comparee des larves de Dipteres. Bulletin Scientifique de la France et de la Belgique 49: 15-198.
  • Kutty SN, Meusemann K, Bayless KM, Marinho MAT, Pont AC, Zhou X, Misof B, Wiegmann BM, Yeates DK, Cerretti P, Meier R, Pape T. 2019. Phylogenomic analysis of Calyptratae: resolving the phylogenetic relationships within a major radiation of Diptera. Cladistics 6: 605-622.
  • Lanfear R, Calcott B, Ho SYW, Guindon S. 2012. PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and EVolution 29: 1695-1701.
  • Leache AD, Zhu T, Rannala B, Yang Z. 2019. The spectre of too many species. Systematic Biology 68: 168-181.
  • LeBlanc K, Boudreau DR, Moreau G. 2021. Small bait traps may not accurately reflect the composition of necrophagous Diptera associated to remains. Insects 12: 261.
  • Lehrer AZ. 1967. Etudes sur les Dipteres Calliphorides. II. Revision de la nomenclature de la tribu Polleniini. Bulletin et Annales de la Societe Royale Belge d'Entomologie 103: 255-259.
  • Luo A, Ling Ch, Ho SYW, Zhu Ch. 2018. Comparison of methods for molecular species delimitation across a range of speciation scenarios. Systematic Biology 67: 830-846.
  • Maddison WP, Maddison DR. 2019. Mesquite: a modular system for eVolutionary analysis, V.3.61. Available at: http://www.mesquiteproject.org (10 August 2019, date last accessed).
  • Mawlood NA, Abdul-Rassoul MS. 2009. A new species of the genus Pollenia Rob.-Desvoidy, 1830 (Diptera: Calliphoridae) from Iraq. Bulletin Iraq National History Museum 10: 59-65.
  • Meier R, Lim GS. 2009. Conflict, convergent evolution, and the relative importance of immature and adult characters in Endopterygote phylogenetics. Annual ReVieae of Entomology 54: 85-104.
  • Meier R, Shiyang K, Vaidya G, Ng PKL. 2006. DNA barcoding and taxonomy in Diptera:a tale of high intraspecific variability and low identification success. Systematic Biology 55: 715-728.
  • Meier R, Wong W, Srivathsan A, Foo M. 2016. $1 DNA barcodes for reconstructing complex phenomes and finding rare species in specimen-rich samples. Cladistics 32: 100-110.
  • Mihalyi F. 1976. Contributions to the knowledge of the genus Polleni a R.-D. (Diptera, Calliphoridae). Acta Zoologica Academiae Scientiarum Hungaricae 22: 327-333.
  • Monaghan MT, Wild R, Elliot MF, Fujisawa T, Balke M, Inward DJG, Lees DC, Ranaivosolo R, Eggleton P, Barraclough TG, Vogler AP. 2009. Accelerated species inventory on Madagascar using coalescent-based models of species delineation. Systematic Biology 58: 298-311.
  • Papadopoulou A, Anastasiou I, Vogler AP. 2010. Revisiting the insect mitochondrial molecular clock: the mid-Aegean trench calibration. Molecular Biology and EVolution 27: 1659-1672.
  • Pentinsaari M, Vos R, Mutanen M. 2017. Algorithmic single-locus species delimitation: effects of sampling effort, variation and nonmonophyly in four methods and 1870 species of beetles. Molecular Ecology Resources 17: 393-404.
  • Pimentel D, Epstein B. 1960. The cluster fly, Pollenia rudis (Diptera: Calliphoridae). Annals of the Entomological Society of America 53: 553-554.
  • Piwczynski M, Pape T, Deja-Sikora E, Sikora M, Akbarzadeh K, Szpila K. 2017. Molecular phylogeny of Miltogramminae (Diptera: Sarcophagidae): implications for classification, systematics and evolution of larval feeding strategies. Molecular Phylogenetics and EVolution 116: 49-60.
  • Pons J, Barraclough TG, Gomez-Zurita J, Cardoso A, Duran DP, Hazell S, Kamoun S, Sumlin WD, Vogler AP. 2006. Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Systematic Biology 55: 595-609.
  • Puillandre N, Lambert A, Brouillet S, Achaz G. 2012. ABGD, Automatic Barcode Gap Discovery for primary species delimitation. Molecular Ecology 21: 1864-1877.
  • Rader R, Cunningham SA, Howlett BG, Inouye DW. 2020. Non-bee insects as visitors and pollinators of crops: biology, ecology and management. Annual ReVieae of Entomology 65: 20.1-20.17.
  • Rambaut A, Drummond AJ, Xie D, Baele G, Suchard MA. 2018. Posterior summarization in Bayesian phylogenetics using tracer 1.7. Systematic Biology 67: 901-904.
  • Rannala B, Yang Z. 2017. Efficient Bayesian species tree inference under the multispecies coalescent. Systematic Biology 66: 823-842.
  • Renner MAM, Heslewood MM, Patzak SDF, Schafer- Verwimp A, Heinrichs J. 2017. By how much do we underestimate species diversity of liverworts using morphological evidence? An example from Australasian Plagiochila (Plagiochilaceae: Jungermanniopsida). Molecular Phylogenetics and EVolution 107: 576-593.
  • Rognes K. 1987a. The taxonomy of the Pollenia rudis speciesgroup in the Holarctic Region (Diptera: Calliphoridae). Systematic Entomology 12: 475-502.
  • Rognes K. 1987b. A new species in the intermedia-group and a new synonymy in the genus Pollenia Robineau-Desvoidy, 1830 (Diptera: Calliphoridae), Systematic Entomology 12: 381-388.
  • Rognes K. 1988. The taxonomy and phylogenetic relationships of the Pollenia semicinerea species-group (Diptera: Calliphoridae). Systematic Entomology 13: 315-345.
  • Rognes K. 1991a. Bloaeflies (Diptera, Calliphoridae) of Fennoscandia and Denmark. Leiden-New York-Kobenhavn- Koln: E. J. Brill/Scandinavian Science Press Ltd.
  • Rognes K. 1991b. Revision of the cluster-flies of the Pollenia Viatica species-group (Diptera: Calliphoridae). Systematic Entomology 16: 439-498.
  • Rognes K. 1992a. Revision of the cluster-flies of the Pollenia Venturii species-group, with a cladistic analysis of Palaearctic species of Pollenia Robineau-Desvoidy (Diptera: Calliphoridae). Insect Systematics and EVolution 23: 233-248.
  • Rognes K. 1992b. Revision of the cluster-flies of the Pollenia Vagabunda species-group (Diptera: Calliphoridae). Entomologica ScandinaVica 23: 95-114.
  • Rognes K. 1997. The Calliphoridae (Blowflies) (Diptera: Oestroidea) are not a monophyletic group.Cladistics 13: 27-66.
  • Rognes K. 1998. Family Calliphoridae. In: Papp L, ed. Contributions to a manual of Palaearctic Diptera: higher Brachycera. Budapest: Science Herald Press, 617-648.
  • Rognes K. 2010. Revision of the cluster flies of the Pollenia haeretica species-group (Diptera, Calliphoridae). Zootaxa 56: 39-56.
  • Rognes K. 2016. A new species of Pollenia Robineau-Desvoidy, 1830 from Jordan (Diptera: Calliphoridae: Polleniinae). Zootaxa 4067: 569-576.
  • Rognes K. 2019. The Calliphoridae (Diptera) of Armenia. Zootaxa 4576: 375-391.
  • Rognes K, Baz A. 2008. A new species in the Pollenia Viatica species-group from Sierra de Guadarrama, Spain (Diptera: Calliphoridae). Studia Dipterologica 14: 389-395.
  • Ronquist F, Teslenko M, Van der Mark P, Ayres DL, Darling A, Hohna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61: 539-542.
  • Schluesslmayr G, Sivell O. 2021. Pollenia margarita, a new species of Pollenia Robineau-Desvoidy, 1830 from Austria (Diptera, Polleniidae). Linzer Biologische Beitrage 53: 413-419.
  • Schumann H. 1986. Family Calliphoridae. In: Soos A, Papp L, eds. Catalogue of Palaearctic Diptera. Vol. 12 Calliphoridae - Sarcophagidae. Budapest: Akademiai Kiado, 11-58.
  • Srivathsan A, Meier R. 2012. On the inappropriate use of Kimura-2-parameter (K2P) divergences in the DNAbarcoding literature. Cladistics 28: 190-194.
  • Stamatakis A. 2014 . RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30: 1312-1313.
  • Sukumaran J, Holder MT. 2010. DendroPy: a Python library for phylogenetic computing, Bioinformatics 26: 1569-1571.
  • Sutherland B. 1979. The effect of temperature on the frons width in males of Stomoxys calcitrans Linnaeus (Diptera: Muscidae). Onderstepoort Journal of Veterinary Research 46: 117-119.
  • Szpila K. 1999. Blowflies (Diptera:Calliphoridae) of the Bialowieza Forest. Parki Narodoaee i Rezeraeaty Przyrody 18.1: 43-51.
  • Szpila K. 2003a. First instar larvae of nine West-Palaearctic species of Pollenia Robineau-Desvoidy, 1830 (Diptera: Calliphoridae). Entomologica Fennica 14: 193-210.
  • Szpila K. 2003b. Actual impact of the blowfly - parasitoids in earthworms (Oligochaeta: Lumbricidae) of cultivated fields, against the literature data. Wiadomosci Entomologiczne 22: 211-220.
  • Szpila K. 2017. Annotated list of blowflies (Diptera: Calliphoridae) recorded during studies of insect succession on large carrion in Poland. Dipteron 33: 85-93.
  • Szpila K, Draber-Monko A. 2008. Pollenia moraVica (Jacentkovsky, 1941) (Diptera: Calliphoridae) recorded from Poland for the first time. Fragmenta faunistica 51: 139-142.
  • Tawfik MFS, El-Husseini MM. 1971. Life-history of Pollenia dasypoda Portochisky [sic!] a parasite of the earth worm Allolobophora caliginosa (Sav.). Bulletin de la Societe Entomoloque d'Egypte 55: 275-287.
  • Thomson AJ,Davies DM. 1973. The biology of Pollenia rudis, the cluster fly (Diptera: Calliphoridae). II. Larval feeding behaviour and host specificity. Canadian Entomologist 105: 985-990.
  • Vezsenyi KA, Langer SV, Samkari BA, Beresfrod DV. 2022. The history and current state of cluster flies (Diptera: Polleniidae: Pollenia) in North America, with new Canadian provincial records. Canadian Entomologists 154: e24.
  • Weiner CN, Werner M, Linsenmair KE, Bluthgen N. 2014. Land-use impacts on plant-pollinator networks: interaction strength and specialization predict pollinator declines. Ecology 95: 466-474.
  • Wiens JJ, Servedio MR. 2000. Species delimitation in systematics: inferring diagnostic differences between species. Proceedings of the Royal Society of London, B 267: 631-636.
  • Winkler IS, Blaschke JD, Davis DJ, Stireman JO, O'Hara JE, Cerretti P, Moulton JK. 2015. Explosive radiation or uninformative genes? Origin and early diversification of tachinid flies (Diptera: Tachinidae) Molecular Phylogenetics and EVolution 88: 38-54.
  • Yahnke W, George JA. 1972. Rearing and immature stages of the cluster fly (Pollenia rudis) (Diptera: Calliphoridae) in Ontario. Canadian Entomologist 104: 567-576.
  • Yan L, Pape T, Meusemann K, Kutty SN, Meier R, Bayless KM, Zhang D. 2021. Monophyletic blowflies revealed by phylogenomics. BMC Biology 19: 230.
  • Yang Z, Rannala B. 2014. Unguided species delimitation using DNA sequence data from multiple loci. Molecular Biology and EVolution 31: 3125-3135.
  • Yang Z, Rannala B. 2017. Bayesian species identification under the multispecies coalescent provides significant improvements to DNA barcoding analyses. Molecular Ecology 26: 3028-3036.
  • Zumpt F. 1956. 64i. Calliphorinae. In: Lindner E, ed. Die Fliegen der Palaearktischen Region, 11 (Lieferungen 190, 191, 193). Stuttgart: Schweizerbart, 1-140.
  • Zwickl DJ. 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Unpublished Ph. D. Thesis, University of Texas, Austin.