smot: a python package and CLI tool for contextual phylogenetic subsampling

This work was supported in part by: the U.S. Department of Agriculture (USDA) Agricultural Research Service [ARS project number 5030-32000-231-000-D]; the U.S. Department of Agriculture (USDA) Animal and Plant Health Inspection Service [ARS project number 5030-32000-231-080-I]; the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services [contract number 75N93021C00015]; the USDA Agricultural Research Service Research Participation Program of the Oak Ridge Institute for Science and Education (ORISE) through an interagency agreement between the U.S. Department of Energy (DOE) and the USDA Agricultural Research Service [contract number DE-AC05- 06OR23100]; and the SCINet project of the USDA Agricultural Research Service [ARS project number 0500-00093-001-00-D]. The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication. Mention of trade names or commercial products in this article is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the USDA, DOE, or ORISE. USDA is an equal opportunity provider and employer.