Published December 15, 2022 | Version v1
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An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar

  • 1. CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, 4485-661 Vairão, Portugal
  • 2. Museum of Natural Sciences and Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA Ễcarl.hutter@gmail.com; https://orcid.org/0000-0001-6381-6339
  • 3. Hauptstr. 13, 82234 Wessling, Germany Ễandrea@gutachten-hildenbrand.de
  • 4. Museo Regionale di Scienze Naturali, Via G. Giolitti, 36, 10123 Torino, Italy
  • 5. Natural and Environmental Sciences, Regional University Centre of the SAVA Region (CURSA), Antalaha, Madagascar Ễthiorosinf@yahoo.fr; https://orcid.org/0000-0001-7205-7282
  • 6. Mention Zoologie et Biodiversité Animale, Université d'Antananarivo, BP 906, Antananarivo, 101 Madagascar

Description

Scherz, Mark D., Crottini, Angelica, Hutter, Carl R., Hildenbrand, Andrea, Andreone, Franco, Fulgence, Thio Rosin, Köhler, Gunther, Ndriantsoa, Serge Herilala, Ohler, Annemarie, Preick, Michaela, Rakotoarison, Andolalao, Rancilhac, Loïs, Raselimanana, Achille P., Riemann, Jana C., Rödel, Mark-Oliver, Rosa, Gonçalo M., Streicher, Jeffrey W., Vieites, David R., Köhler, Jörn, Hofreiter, Michael, Glaw, Frank, Vences, Miguel (2022): An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar. Megataxa 7 (2): 113-311, DOI: 10.11646/megataxa.7.2.1, URL: http://dx.doi.org/10.5281/zenodo.6687412

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References

  • Ahl, E. (1929 '1928') Beschreibung neuer Fr ˆ sche aus Madagascar. Mitteilungen aus dem Zoologischen Museum in Berlin, 14, 469-484.
  • Ahrens, D., Ahyong, S.T., Ballerio, A., Barclay, M.V.L., Eberle, J., Espeland, M., Huber, B.A., Mengual, X., Pacheco, T.L., Peters, R.S., Rulik, B., Vaz-de-Mello, F., Wesener, T. & Krell, F.-T. (2021) Is it time to describe new species without diagnoses?-A comment on Sharkey et al. (2021). Zootaxa, 5027, 151-159. https://doi.org/10.11646/zootaxa.5027.2.1
  • Alluaud, C.A. (1893) Correspondance. Compte rendu des Seances de la Societe de Geographie et de la Commission centrale, 14 (Numero Supplementaire), 355.
  • AmphibiaWeb. (2022) AmphibiaWeb: Information on amphibian biology and conservation. Available at: http://amphibiaweb. org. Accessed 10 March 2022. https://amphibiaweb.org/, accessed: 10 March 2022.
  • Andreone, F., Cadle, J.E., Cox, N., Glaw, F., Nussbaum, R.A., Raxworthy, C.J., Stuart, S.N., Vallan, D. & Vences, M. (2005) Species review of amphibian extinction risks in Madagascar: conclusions from the Global Amphibian Assessment. Conservation Biology, 19, 1790-1802. https://doi.org/10.1111/j.1523-1739.2005.00249.x
  • Andreone, F., Crottini, A., Rabemananjara, F.C.E., Randrianirina, J.E., Razafindrabe, T. & Tessa, G. (2014) Age structure, population estimate and Bd-status of two Critically Endangered frogs from the Ankaratra Massif (Madagascar), Boophis willliamsi and Mantidactylus pauliani (Amphibia: Mantellidae). Scripta Herpetologica, Studies on Amphibians and Reptiles in honour of Benedetto Lanza, 17-29.
  • Andreone, F., Dawson, J.S., Rabemananjara, F.C.E., Rabibisoa, N.H.C. & Rakotonanahary, T.F. (2016) New Sahonagasy Action Plan 2016-2020. Turin, Italy, Museo Regionale di Scienze Naturali & Amphibian Survival Alliance, 46 pp.
  • Andreone, F., Glaw, F., Nussbaum, R.A., Raxworthy, C.J., Vences, M. & Randrianirina, J.E. (2003) The amphibians and reptiles of Nosy Be (NW Madagascar) and nearby islands: a case study of diversity and conservation of an insular fauna. Journal of Natural History, 37, 2119-2149. https://doi.org/10.1080/00222930210130357
  • Angel, F. (1929) Materiaux de la Mission G. Petit a Madagascar. Description de trois Batraciens nouveaux appartenant aux genres Mantidactylus et Gephyromantis. Bulletin du Museum National d'Histoire Naturelle, Paris, Serie 2, 1, 358-362.
  • Angel, F.(1930) Description d'un Batracien nouveau de Madagascar, appartenant au genre Mantidactylus (Materiaux des Missions de M. R. Decary). Bulletin du Museum National d'Histoire Naturelle, Paris, Serie 2, 2, 619-620.
  • Avise, J.C. & Ball, R.M. (1990) Principles of genealogical concordance in species concepts and biological taxonomy. In: Futuyma, D. & Antonovics, J. (Eds.) Oxford Surveys in Evolutionary Biology. Oxford University Press, Oxford, UK, pp. 45-67.
  • Bankevich, A., Nurk, S., Antipov, D., Gurevich, A.A., Dvorkin, M., Kulikov, A.S., Lesin, V.M., Nikolenko, S.I., Pham, S., Prjibelski, A.D. & Pyshkin, A.V. (2012) SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. Journal of Computational Biology, 19, 455-477. https://doi.org/10.1089/cmb.2012.0021
  • Barbour, T. & Loveridge, A. (1929) Typical reptiles and amphibians in the Museum of Comparative Zo ˆ logy. Bulletin of the Museum of Comparative Zoology, 69, 205-360.
  • Barbour, T. & Loveridge, A. (1946) First supplement to typical reptiles and amphibians. Bulletin of the Museum of Comparative Zoology, 96, 59-214.
  • Basler, N., Xenikoudakis, G., Westbury, M.V., Song, L., Sheng, G. & Barlow, A. (2017) Reduction of the contaminant fraction of DNA obtained from an ancient giant panda bone. BMC Research Notes, 10, 754. https://doi.org/10.1186/s13104-017-3061-3
  • Bernal, M.H. & Clavijo, J.A. (2009) An essay on precision in morphometric measurements in anurans: inter-individual, intra-individual and temporal comparisons. Zootaxa, 2246, 32-44. https://doi.org/10.11646/zootaxa.2246.1.3
  • Bletz, M.C., Rosa, G.M., Andreone, F., Courtois, E.A., Schmeller, D.S., Rabibisoa, N.H.C., Rabemananjara, F.C.E., Raharivololoniaina, L., Vences, M., Weldon, C., Edmonds, D., Raxworthy, C.J., Harris, R.N., Fisher, M.C. & Crottini, A. (2015) Widespread presence of the pathogenic fungus Batrachochytrium dendrobatidis in wild amphibian communities in Madagascar. Scientific Reports, 5, 1-10. https://doi.org/10.1038/srep08633
  • Blommers-Schl ˆ sser, R.M.A. (1979) Biosystematics of the Malagasy frogs. I. Mantellinae (Ranidae). Beaufortia, 352, 1-77.
  • Blommers-Schl ˆ sser, R.M.A. & Blanc, C.P. (1991) Amphibiens (premiere partie). Faune de Madagascar, 75, 1-397.
  • Boettger, O. (1880) Diagnoses reptilium et batrachiorum novorum a Carolo Ebenau in insula Nossi-Be madagascariensi lectorum. Zoologischer Anzeiger, 3, 279-283.
  • Boettger, O. (1881) Diagnoses reptilium et batrachiorum novorum ab ill. Antonio Stumpff in insula Nossi-Be Madagascariensi lectorum. Zoologischer Anzeiger, 4, 358-362.
  • Boettger, O. (1913) Reptilien und Amphibien von Madagascar, den Inseln und dem Festland Ostafrikas. Reise in Ost-Afrika in den Jahren 1903-1905 mit Mitteln der Hermann und Elise geb. Heckmann-Wentzel-Stiftung. Wissenschaftliche Ergebnisse. Systematische Arbeiten., 3, 269-376.
  • Bora, P., Otisitraka Randriambahiniarime, M., Rabemananjara, F.C.E., Ravoahangimalala Ramilijaona, O., Glaw, F. &Vences, M. (2007) A rapid assessment survey of the herpetofauna at Befotaka-Midongy National Park, south-eastern Madagascar. Mitteilungen aus dem Museum f¸r Naturkunde in Berlin - Zoologische Reihe, 83, 170-178. https://doi.org/10.1002/mmnz.200700007
  • Boulenger, G.A. (1882) Catalogue of the Batrachia Salientia s. Ecaudata in the Collection of the British Museum. Taylor and Francis, London, UK. 2nd Edition.
  • Boulenger, G.A. (1889) Descriptions of new reptiles and batrachians from Madagascar. Annals and Magazine of Natural History, Series 6, 4, 244-248. https://doi.org/10.1080/00222938909460511
  • Boulenger, G.A. (1895) On a genus of frog peculiar to Madagascar. Annals and Magazine of Natural History, Series 6, 15, 450. https://doi.org/10.1080/00222939508677910
  • Boulenger, G.A. (1895 '1894') Third report on additions to the batrachian collection in the Natural-History Museum. Proceedings of the Zoological Society of London, 1894, 640- 646.
  • Boulenger, G.A. (1919 '1918') On the Madagascar frogs of the genus Mantidactylus. Proceedings of the Zoological Society of London, 1918, 257-261. https://doi.org/10.1111/j.1096-3642.1918.tb02096.x
  • Boumans, L., Vieites, D.R., Glaw, F. & Vences, M. (2007) Geographical patterns of deep mitochondrial differentiation in widespread Malagasy reptiles. Molecular Phylogenetics and Evolution, 45, 822-839. https://doi.org/10.1016/j.ympev.2007.05.028
  • Brown, J.L., Cameron, A., Yoder, A.D. & Vences, M. (2014) A necessarily complex model to explain the biogeography of the amphibians and reptiles of Madagascar. Nature Communications, 5, 5046. https://doi.org/10.1038/ncomms6046
  • Brown, J.L., Sillero, N., Glaw, F., Bora, P., Vieites, D.R. & Vences, M. (2016) Spatial biodiversity patterns of Madagascar's amphibians and reptiles. PLoS One, 11, e0144076. https://doi.org/10.1371/journal.pone.0144076
  • Br¸hl, C.A., Schmidt, T., Pieper, S. & Alscher, A. (2013) Terrestrial pesticide exposure of amphibians: An underestimated cause of global decline? Scientific Reports, 3, 1135. https://doi.org/10.1038/srep01135
  • Buitrago Aristizabal, M.A., Oliveira Gouvea De Figueiredo, F. & Andre, T. (2020) Accommodating trait overlap and individual variability in species diagnosis of Ischnosiphon (Marantaceae). Botanical Journal of the Linnean Society, 194, 469-479. https://doi.org/10.1093/botlinnean/boaa043
  • Bushnell, B., Rood, J. & Singer, E. (2017) BBMerge -Accurate paired shotgun read merging via overlap. PLoS One, 12, e0185056. https://doi.org/10.1371/journal.pone.0185056
  • Capella-Gutierrez, S., Silla-Martinez, J.M. & Gabaldon, T. (2009) trimAl: a tool for automated alignment trimming in largescale phylogenetic analyses. Bioinformatics, 25, 1972-1973. https://doi.org/10.1093/bioinformatics/btp348
  • Catenazzi, A. (2015) State of the world's amphibians. Annual Review of Environment and Resources, 40, 91-119. https://doi.org/10.1146/annurev-environ-102014-021358
  • Chan, K.O., Hutter, C.R., Wood, P.L.J., Grismer, L.L., Das, I. & Brown, R.M. (2020) Gene flow creates a mirage of cryptic species in a Southeast Asian spotted stream frog complex. Molecular Ecology, 29, 3970-3987. https://doi.org/10.1111/mec.15603
  • Chan, K.O., Hutter, C.R., Wood, P.L.J., Su, Y.-C. & Brown, R.M. (2022) Gene flow increases phylogenetic structure and inflates cryptic species estimations: a case study on widespread Philippine puddle frogs (Occidozyga laevis). Systematic Biology, 71, 40-57. https://doi.org/10.1093/sysbio/syab034
  • Chen, S., Huang, T., Zhou, Y., Han, Y., Xu, M. & Gu, J. (2017) AfterQC: automatic filtering, trimming, error removing and quality control for fastq data. BMC Bioinformatics, 18, 80. https://doi.org/10.1186/s12859-017-1469-3
  • Cocca, W., Rosa, G.M., Andreone, F., Aprea, G., Bergo, P.E., Mattioli, F., Mercurio, V., Randrianirina, J.E., Rosado, D., Vences, M. & Crottini, A. (2018) The herpetofauna (Amphibia, Crocodylia, Squamata, Testudines) of the Isalo Massif, Southwest Madagascar: combining morphological, molecular and museum data. Salamandra, 54, 178-200.
  • Cook, L.G., Edwards, R.D., Crisp, M.D. & Hardy, N.B. (2010) Need morphology always be required for new species descriptions? Invertebrate Systematics, 24, 322-326. https://doi.org/10.1071/IS10011
  • Crottini, A., Harris, D.J., Miralles, A., Glaw, F., Jenkins, R.K.B., Randrianantoandro, J.C., Bauer, A.M. & Vences, M. (2015) Morphology and molecules reveal two new species of the poorly studied gecko genus Paragehyra (Squamata: Gekkonidae) from Madagascar. Organisms Diversity & Evolution, 15, 175-198. https://doi.org/10.1007/s13127-014-0191-5
  • Dabney, J., Knapp, M., Glock, I., Gansauge, M., Weihmann, A., Nickel, B., Valdioserad, C., Garcia, N., Paabo, S., Arsuag, J. & Meyer, M. (2013) Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proceedings of the National Academy of Sciences of the USA, 110, 15758-15763. https://doi.org/10.1073/pnas.1314445110
  • Dayrat, B. (2005) Towards integrative taxonomy. Biological Journal of the Linnean Society, 85, 407-415. https://doi.org/10.1111/j.1095-8312.2005.00503.x
  • de Queiroz, K. (1998) The General Lineage Concept of species, species criteria, and the process of speciation. In: Howard, D.J. & Berlocher, S.H. (Eds.) Endless Forms: Species and Speciation. Oxford University Press, Oxford, UK, pp. 57-75.
  • de Queiroz, K. (2007) Species concepts and species delimitation. Systematic Biology, 56, 879-886. https://doi.org/10.1080/10635150701701083
  • de Queiroz, K. (2020) An updated concept of subspecies resolves a dispute about the taxonomy of incompletely separated lineages. Herpetological Review, 51, 459-461.
  • Dubois, A. (1992) Notes sur la classification des Ranidae (Amphibiens Anoures). Bulletin Mensuel de la Societe Linneenne de Lyon, 61, 305-352. https://doi.org/10.3406/linly.1992.11011
  • Dufresnes, C., Brelsford, A., Jeffries, D.L., Mazepa, G., Suchan, T., Canestrelli, D., Nicieza, A., Fumagalli, L., Dubey, S., Martinez-Solano, I., Litvinchuk, S.N., Vences, M., Perrin, N. & Crochet, P.-A. (2021) Mass of genes rather than master genes underlie the genomic architecture of amphibian speciation. Proceedings of the National Academy of Sciences of the USA, 118, e2103963118. https://doi.org/10.1073/pnas.2103963118
  • Edmonds, D., Kessler, E. & Bolte, L. (2019) How common is common? Rapidly assessing population size and structure of the frog Mantidactylus betsileanus at a site in east-central Madagascar. Austral Ecology, 44, 1196-1203. https://doi.org/10.1111/aec.12797
  • Edmonds, D., Rakotoarisoa, J.C., Dolch, R., Pramuk, J., Gagliardo, R., Andreone, F., Rabibisoa, N., Rabemananjara, F., Rabesihanaka,S.&Robsomanitrandrasana,E.(2012)Building capacity to implement conservation breeding programs for frogs in Madagascar: Results from year one of Mitsinjo's amphibian husbandry research and captive breeding facility. Amphibian & Reptile Conservation, 5, 57-69.
  • Endler, D., Klein, J., Antonelli, A. & Silvestro, D. (2020) raxmlGUI 2.0: A graphical interface and toolkit for phylogenetic analyses using RAxML. Methods in Ecology and Evolution, 12, 373-377. https://doi.org/10.1111/2041-210X.13512
  • Everson, K.M., Jansa, S.A., Goodman, S.M. & Olson, L.E. (2020) Montane regions shape patterns of diversification in small mammals and reptiles from Madagascar's moist evergreen forest. Journal of Biogeography, 47, 2059-2072. https://doi.org/10.1111/jbi.13945
  • Fedosov, A., Achaz, G. & Puillandre, N. (2019) Revisiting use of DNA characters in taxonomy with MolD - a tree independent algorithm to retrieve diagnostic nucleotide characters from monolocus datasets. bioRxiv, 838151. https://doi.org/10.1101/838151
  • Feng, Y.-J., Blackburn, D.C., Liang, D., Hillis, D.M., Wake, D.B., Cannatella, D.C. & Zhang, P. (2017) Phylogenomics reveals rapid, simultaneous diversification of three major clades of Gondwanan frogs at the Cretaceous -Paleogene boundary. Proceedings of the National Academy of Sciences of the USA, 114, E5864-E5870. https://doi.org/10.1073/pnas.1704632114
  • Fernandez-Triana, J.L. (2022) Turbo taxonomy approaches: lessons from the past and recommendations for the future based on the experience with Braconidae (Hymenoptera) parasitoid wasps. ZooKeys, 1087, 199-220. https://doi.org/10.3897/zookeys.1087.76720
  • Ficetola, G.F. & de Bernardi, F. (2006) Trade-off between larval development rate and post-metamorphic traits in the frog Rana latastei. Evolutionary Ecology, 20, 143-158. https://doi.org/10.1007/s10682-005-5508-6
  • Forsman, A. (2015) Rethinking phenotypic plasticity and its consequences for individuals, populations and species. Heredity, 115, 276-284. https://doi.org/10.1038/hdy.2014.92
  • Fouquet, A., Gilles, A., Vences, M., Marty, C., Blanc, M. & Gemmell, N.J. (2007) Underestimation of species richness in neotropical frogs revealed by mtDNA analyses. PLoS One, 2, e1109. https://doi.org/10.1371/journal.pone.0001109
  • Frizzell, D.L. (1933) Terminology of types. The American Midland Naturalist, 14, 637-668. https://doi.org/10.2307/2420124
  • Frost, D.R. (2021) Amphibian Species of the World: an Online Reference. Version 6.1 (Accessed 18 February 2021). Electronic Database accessible at http://research.amnh.org/ herpetology/amphibia/index.html. American Museum of Natural History, New York, USA
  • Gansauge, M.-T., Gerber, T., Glocke, I., Korlevic, P., Lippik, L., Nagel, S., Riehl, L.M., Schmidt,A. & Meyer, M.(2017) Singlestranded DNA library preparation from highly degraded DNA using T4 DNA ligase. Nucleic Acids Research, 45, e79. https://doi.org/10.1093/nar/gkx033
  • Gansauge, M.-T. & Meyer, M. (2013) Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA. Nature Methods, 8, 737-748. https://doi.org/10.1038/nprot.2013.038
  • Ganzhorn, J.U., Lowry, P.P., Schatz, G.E. & Sommer, S. (2009) The biodiversity of Madagascar: one of the world's hottest hotspots on its way out. Oryx, 35, 346-348. https://doi.org/10.1046/j.1365-3008.2001.00201.x
  • Gavetti, E. & Andreone, F. (1993) Revised catalogue of the herpetological collection in Turin University. 1. Amphibia. Cataloghi. Museo Regionale di Scienze Naturali. Torino 10: 1-187. Cataloghi X, Museo Regionale di Scienze Naturali, Torino, Italy.
  • Glaw, F. & Vences, M. (1992a) A Fieldguide to the Amphibians and Reptiles of Madagascar. Vences & Glaw Verlags GbR, Cologne, Germany, 335 pp. First Edition.
  • Glaw, F. & Vences, M. (1992b) Zur Kenntnis der Gattungen Boophis, Aglyptodactylus und Mantidactylus (Amphibia: Anura) aus Madagaskar, mit Beschreibung einer neuen Art. Bonner zoologische Beitrage, 43, 45-77.
  • Glaw, F. & Vences, M. (1994) A Fieldguide to the Amphibians and Reptiles of Madagascar. Vences & Glaw Verlags GbR, Cologne, Germany, 478 pp. Second Edition.
  • Glaw, F. & Vences, M. (1999) Resurrection and redescription of Mantidactylus tricinctus (Guibe, 1947) from eastern Madagascar (Anura: Ranidae: Mantellinae). Journal of Herpetology, 33, 639-647. https://doi.org/10.2307/1565581
  • Glaw, F. & Vences, M. (2006) Phylogeny and genus-level classification of mantellid frogs (Amphibia, Anura). Organisms Diversity & Evolution, 6, 236-253. https://doi.org/10.1016/j.ode.2005.12.001
  • Glaw, F. & Vences, M. (2007) A Field Guide to the Amphibians and Reptiles of Madagascar. Vences & Glaw Verlags GbR, Cologne, Germany, 496 pp. Third Edition.
  • Glaw, F., Vences, M. & Gossmann, V. (2000) A new species of Mantidactylus (subgenus Guibemantis) from Madagascar, with a comparative survey of internal femoral gland structure in the genus (Amphibia: Ranidae: Mantellinae). Journal of Natural History, 34, 1135-1154. https://doi.org/10.1080/00222930050020140
  • Gonzalez Gutierrez, P.A., K ˆ hler, E. & Borsch, T. (2013) New species of Buxus (Buxaceae) from northeastern Cuba based on morphological and molecular characters, including some comments on molecular diagnosis [Novitiae florae cubensis 40]. Willdenowia, 43, 125-137. https://doi.org/10.3372/wi.43.43115
  • Guibe, J. (1947) Trois Gephyromantis nouveaux de Madagascar (Batraciens). Bulletin du Museum National d'Histoire Naturelle, Paris, Serie 2, 19, 151-155.
  • Guibe, J. (1950) Catalogue des Types d'Amphibiens du Museum National d'Histoire Naturelle. Imprimerie Nationale, Paris, France.
  • Guibe, J. (1973a) Batraciens nouveaux de Madagascar. Bulletin du Museum National d'Histoire Naturelle, Paris, Serie 3, 145, 1009-1017.
  • Guibe, J. (1973b) Batraciens nouveaux de Madagascar. Bulletin du Museum National d'Histoire Naturelle, Paris, Serie 3, 171, 1169-1192.
  • Guibe, J. (1978) Les batraciens de Madagascar. Bonner zoologische Monographien, 11, 1-140.
  • Habel, J.C., Rasche, L., Schneider, U.A., Engler, J.O., Schmid, E., R ˆ dder, D., Meyer, S.T., Trapp, N., del Diego, R.S., Eggermont, H., Lens, L. & Stork, N.E. (2019) Final countdown for biodiversity hotspots. Conservation Letters, 12, e12668. https://doi.org/10.1111/conl.12668
  • Harer, A., Torres-Dowdall, J. & Meyer, A. (2017) Rapid adaptation to a novel light environment: The importance of ontogeny and phenotypic plasticity in shaping the visual system of Nicaraguan Midas cichlid fish (Amphilophus citrinellus spp.). Molecular Ecology, 26, 5582-5593. https://doi.org/10.1111/mec.14289
  • Hawlitschek, O., Nagy, Z.T. & Glaw, F. (2012) Island evolution and systematic revision of Comoran snakes: Why and when subspecies still make sense. PLoS One, 7, e42970. https://doi.org/10.1371/journal.pone.0042970
  • Hillis, D.M. (2019) Species delimitation in herpetology. Journal of Herpetology, 53, 3-12. https://doi.org/10.1670/18-123
  • Hillis, D.M. (2020) The detection and naming of geographic variation within species. Herpetological Review, 51, 52-56.
  • Hillis, D.M. (2022) Species, clades, and their relationship to paraphyly and monophyly: examples from the Pantherophis obsoletus complex. Herpetological Review, 53, 47-53.
  • Houlahan, J.E., Findlay, C.S., Schmidt, B.R., Meyer, A.H. & Kuzmin, S.L. (2000) Quantitative evidence for global amphibian population declines. Nature, 404, 752-755. https://doi.org/10.1038/35008052
  • Hutter, C.R., Cobb, K.A., Portik, D.M., Travers, S.L., Wood Jr, P.L. & Brown, R.M. (2021) FrogCap: A modular sequence capture probe-set for phylogenomics and population genetics for all frogs, assessed across multiple phylogenetic scales. Molecular Ecology Resources, 22, 1100-1119. https://doi.org/10.1111/1755-0998.13517
  • Htter, T., Ganser, M.H., Kocher, M., Halkic, M., Agatha, S. & Augsten, N. (2020) DeSignate: detecting signature characters in gene sequence alignments for taxon diagnoses. BMC Bioinformatics, 21, 151. https://doi.org/10.1186/s12859-020-3498-6
  • Hyde Roberts, S. & Daly, C. (2014) A rapid herpetofaunal assessment of Nosy Komba Island, northwestern Madagascar, with new locality records for seventeen species. Salamandra, 50, 18-26.
  • ICZN. (1999) International Code of Zoological Nomenclature. The International Trust for Zoological Nomenclature, London, 306 pp. 4th Edition.
  • IUCN. (2012) IUCN Red List Categories and Criteria: Version 3.1. IUCN, Gland, Switzerland and Cambridge, UK. 2nd Edition.
  • IUCN SSC Amphibian Specialist Group. (2016) Mantidactylus pauliani. The IUCN Red List of Threatened Species, 2016, e.T57509A84175039. https://doi.org/10.2305/IUCN.UK.2016-1.RLTS.T57509A8-
  • J ˆ rger, K.M. & Schr ˆ dl, M. (2013) How to describe a cryptic species? Practical challenges of molecular taxonomy. Frontiers in Zoology, 10, 59. https://doi.org/10.1186/1742-9994-10-59
  • Katoh, K. & Standley, D.M. (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution, 30, 772-780. https://doi.org/10.1093/molbev/mst010
  • Knoll, A., K ˆ hler, J., Glaw, F., Teschke, M. & Vences, M. (2007) Larval morphology in four species of Madagascan frogs of the subgenus Brygoomantis (Mantellidae: Mantidactylus). Zootaxa, 59, 49-59. https://doi.org/10.11646/zootaxa.1616.1.4
  • K ˆ hler, G. (2021) Taxonomy of horned lizards, genus Phrynosoma (Squamata, Phrynosomatidae). Taxonomy, 1, 83-115. https://doi.org/10.3390/taxonomy1020009
  • K ˆ hler, J., Jansen, M., Rodriguez, A., Kok, P.J.R., Toledo, L.F., Emmrich, M., Glaw, F., Haddad, C.F.B., R ˆ del, M.-O. & Vences, M.(2017) The use of bioacoustics in anuran taxonomy: theory, terminology, methods and recommendations for best practice. Zootaxa, 4251, 1-124. https://doi.org/10.11646/zootaxa.4251.1.1
  • Kollar, J., Poulickova, A. & Dvorak, P. (2022) On the relativity of species, or the probabilistic solution to the species problem. Molecular Ecology, 31, 411-418. https://doi.org/10.1111/mec.16218
  • Kumar, S., Stecher, G. & Tamura, K. (2016) MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Molecular Biology and Evolution, 33, 1870-1874. https://doi.org/10.1093/molbev/msw054
  • Kurabayashi, A., Usuki, C., Mikami, N., Fujii, T., Yonekawa, H., Sumida, M. & Hasegawa, M. (2006) Complete nucleotide sequence of the mitochondrial genome of a Malagasy poison frog Mantella madagascariensis: evolutionary implications on mitochondrial genomes of higher anuran groups. Molecular Phylogenetics and Evolution, 39, 223-236. https://doi.org/10.1016/j.ympev.2005.11.021
  • Laurent, R. (1943) Sur la position systematique et l'osteologie du genre Mantidactylus Boulenger. Bulletin du Musee royal d'Histoire naturelle de Belgique, 19, 1-8.
  • Li, C., Corrigan, S., Yang, L., Straube, N., Harris, M., Hofreiter, M., White, W.T. & Naylor, G.J.P. (2015) DNA capture reveals transoceanic gene flow in endangered river sharks. Proceedings of the National Academy of Sciences of the USA, 112, 13302-13307. https://doi.org/10.1073/pnas.1508735112
  • Librado, P. & Rozas, J. (2009) DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451-1452. https://doi.org/10.1093/bioinformatics/btp187
  • L ˆ tters, S., R ˆ dder, D., Kielgast, J. & Glaw, F. (2011) Hotspots, conservation, and diseases: Madagascar's megadiverse amphibians and the potential impact of chytridiomycosis. In: Zachos, F. & Habel, J. (Eds.) Biodiversity Hotspots. Springer Berlin, Germany, pp. 255-274. https://doi.org/10.1007/978-3-642-20992-5_14
  • Malone, J.H. & Fontenot, B.E. (2008) Patterns of reproductive isolation in toads. PLoS One, 3, e3900. https://doi.org/10.1371/journal.pone.0003900
  • Martinazzo, L.B., Basso, N.G. & Ubeda, C.A. (2011) The aquatic and littoral forms of the Patagonian frog Atelognathus patagonicus (Batrachylinae): new molecular evidence. Zootaxa, 3129, 62-68. https://doi.org/10.11646/zootaxa.3129.1.5
  • Mayden, R.L. (1997) A hierarchy of species concepts: the denouement in the saga of the species problem. In: Claridge, M.F., Dawah, H.A. & Wilson, M.R. (Eds.) Species: The Units of Biodiversity. Chapman & Hall, London, UK, pp. 381-424.
  • McCollum, S.A. & Van Buskirk, J. (1996) Costs and benefits of a predator-induced polyphenism in the gray treefrog Hyla chrysoscelis. Evolution, 50, 583-593. https://doi.org/10.1111/j.1558-5646.1996.tb03870.x
  • Meierotto, S., Sharkey, M.J., Janzen, D.H., Hallwachs, W., Hebert, P.D.N., Chapman, E.G. & Smith, M.A. (2019) A revolutionary protocol to describe understudied hyperdiverse taxa and overcome the taxonomic impediment. Deutsche Entomologische Zeitschrift, 66, 119-145. https://doi.org/10.3897/dez.66.34683
  • Merckelbach, L.M. & Borges, L.M.S. (2020) Make every species count: fastachar software for rapid determination of molecular diagnostic characters to describe species. Molecular Ecology Resources, 20, 1761-1768. https://doi.org/10.1111/1755-0998.13222
  • Mercurio, V. & Andreone, F. (2007) Two new canyon-dwelling frogs from the arid sandstone Isalo Massif, central-southern Madagascar (Mantellidae, Mantellinae). Zootaxa, 1574, 31-47. https://doi.org/10.11646/zootaxa.1574.1.2
  • Mertens, R. (1967) Die herpetologische Sektion des Natur-Museums und Forschungs-Institutes Senckenberg in Frankfurt a. M. nebst einem Verseichnis ihrer Typen. Senckenbergiana Biologica, 48, 1-106.
  • Millot, J. & Guibe, J. (1950) Les batraciens du nord de l'Andringitra (Madagascar). Memoires de l'Institut Scientifique de Madagascar, 4, 197-206.
  • Miralles, A., Bruy, T., Crottini, A., Rakotoarison, A., Ratsoavina, F.M., Scherz, M.D., Schmidt, R., K ˆ hler, J., Glaw, F. & Vences, M. (2021) Completing a taxonomic puzzle: integrative review of geckos of the Paroedura bastardi species complex (Squamata, Gekkonidae). Vertebrate Zoology, 71, 27-48. https://doi.org/10.3897/vz.71.e59495
  • Miralles, A. & Vences, M. (2013) New metrics for comparison of taxonomies reveal striking discrepancies among species delimitation methods in Madascincus lizards. PLoS One, 8, e68242. https://doi.org/10.1371/journal.pone.0068242
  • Mocquard, F. (1895a) Sur les reptiles recueillis Madascar de 1867 a 1885 par M. Grandidier. Bulletin de la Societe Philomathique de Paris, Huitieme Serie, 7, 93-111.
  • Mocquard, M.F. (1895b) Sur une collection de reptiles recueillis a Madagascar par MM. Alluaud et Belly. Bulletin de la Societe Philomathique de Paris, Huitieme Serie, 7, 112-136.
  • Moen, D.S., Morlon, H. & Wiens, J.J. (2016) Testing convergence versus history: convergence dominates phenotypic evolution for over 150 million years in frogs. Systematic Biology, 65, 146-160. https://doi.org/10.1093/sysbio/syv073
  • Munoz, J. (2007) Biodiversity conservation including uncharismatic species. Biodiversity and Conservation, 16, 2233-2235. https://doi.org/10.1007/s10531-006-9147-1
  • Muschick, M., Barluenga, M., Salzburger, W. & Meyer, A. (2011) Adaptive phenotypic plasticity in the Midas cichlid fish pharyngeal jaw and its relevance in adaptive radiation. BMC Evolutionary Biology, 11, 116. https://doi.org/10.1186/1471-2148-11-116
  • Myers, N., Mittermeier,R.A., Mittermeier,C.G., da Fonseca, G.A.B. & Kent, J. (2000) Biodiversity hotspots for conservation priorities. Nature, 403, 853-858. https://doi.org/10.1038/35002501
  • Ndriantsoa, S.H., Riemann, J.C., Raminosoa, N.R., R ˆ del, M.- O. & Glos, J. (2017) Amphibian diversity in the matrix of a fragmented landscape around Ranomafana in Madagascar depends on matrix quality. Tropical Conservation Science, 10, 1-16. https://doi.org/10.1177/1940082916686065
  • Nikolenko, S.I., Korobeynikov, A.I. & Alekseyev, M.A. (2013) BayesHammer: Bayesian clustering for error correction in single-cell sequencing. BMC Genomics, 14, S7. https://doi.org/10.1186/1471-2164-14-S1-S7
  • Nosil, P. (2012) Ecological Speciation. Oxford University Press, Oxford, UK, 274 pp. https://doi.org/10.1093/acprof:osobl/9780199587100.001.0001
  • Padial, J.M., Castroviejo-Fisher, S., K ˆ hler, J., Vila, C., Chaparro, J.C. & de la Riva, I. (2009) Deciphering the products of evolution at the species level: the need for an integrative taxonomy. Zoologica Scripta, 38, 431-447. https://doi.org/10.1111/j.1463-6409.2008.00381.x
  • Padial, J.M., Miralles, A., De La Riva, I. & Vences, M. (2010) The integrative future of taxonomy. Frontiers in Zoology, 7, 16. https://doi.org/10.1186/1742-9994-7-16
  • Paijmans, J.L.A., Baleka, S., Henneberger, K., Taron, U.H., Trinks, A., Westbury, M.V. & Barlow, A. (2017) Sequencing singlestranded libraries on the Illumina NextSeq 500 platform. arXiv, arXiv:1711.11004.
  • Paijmans, J.L.A., Fickel, J., Courtiol, A., Hofreiter, M. & F ˆ rster, D.W. (2016) Impact of enrichment conditions on cross-species capture of fresh and degraded DNA. Molecular Ecology Resources, 16, 42-55. https://doi.org/10.1111/1755-0998.12420
  • Paradis, E. & Schliep, K. (2019) ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R. Bioinformatics, 35, 526-528. https://doi.org/10.1093/bioinformatics/bty633
  • Penny, S.G., Crottini, A., Andreone, F., Bellati, A., Rakotozafy, L.M.S., Holderied, M.W., Schwitzer, C. & Rosa, G.M. (2017) Combining old and new evidence to increase the known biodiversity value of the Sahamalaza Peninsula, Northwest Madagascar. Contributions to Zoology, 86, 273-296. https://doi.org/10.1163/18759866-08604002
  • Peracca, M.G. (1893) Descrizione di nuove specie di rettili e anfibi di Madagascar. Nota II (1). Bollettino dei Musei di Zoologia ed Anatomia comparata della R. Universita di Torino, 8, 1-16. https://doi.org/10.5962/bhl.part.27224
  • Perl, R.G.B., Nagy, Z.T., Sonet, G., Glaw, F., Wollenberg, K.C. & Vences, M. (2014) DNA barcoding Madagascar's amphibian fauna. Amphibia-Reptilia, 35, 197-206. https://doi.org/10.1163/15685381-00002942
  • Pfennig, D. (1990) The adaptive significance of an environmentallycued developmental switch in an anuran tadpole. Oecologia, 85, 101-107. https://doi.org/10.1007/BF00317349
  • Piersma, T. & Drent, J. (2003) Phenotypic flexibility and the evolution of organismal design. Trends in Ecology and Evolution, 18, 228-233. https://doi.org/10.1016/S0169-5347(03)00036-3
  • Poth, D., Peram, P.S., Vences, M. & Schulz, S. (2013) Macrolides and alcohols as scent gland constituents of the Madagascan frog Mantidactylus femoralis and their intraspecific diversity. Journal of Natural Products, 76, 1548-1558. https://doi.org/10.1021/np400131q
  • Poth, D., Wollenberg, K.C., Vences, M. & Schulz, S. (2012) Volatile amphibian pheromones: macrolides of mantellid frogs from Madagascar. Angewandte Chemie International Edition, 51, 1-5. https://doi.org/10.1002/anie.201106592
  • Price, S.J., Garner, T.W.J., Nichols, R.A., Balloux, F., Ayres, C., Mora-Cabello de Alba, A. & Bosch, J. (2014) Collapse of Amphibian Communities Due to an Introduced Ranavirus. Current Biology, 24, 2586-2591. https://doi.org/10.1016/j.cub.2014.09.028
  • Pr ˆ tzel, D., Scherz, M.D., Ratsoavina, F.M., Vences, M. & Glaw, F. (2020) Untangling the trees: Revision of the Calumma nasutum complex (Squamata: Chamaeleonidae). Vertebrate Zoology, 70, 23-59. https://doi.org/10.1093/zoolinnean/zlx112
  • Pr ˆ tzel, D., Vences, M., Hawlitschek, O., Scherz, M.D., Ratsoavina, F.M.& Glaw, F.(2018) Endangered beauties:micro-CT cranial osteology, molecular genetics and external morphology reveal three new species of chameleons in the Calumma boettgeri complex (Squamata: Chamaeleonidae). Zoological Journal of the Linnean Society, 184, 471-498. https://doi.org/10.1093/zoolinnean/zlx112
  • Pr ˆ tzel, D., Vences, M., Scherz, M.D., Vieites, D.R. & Glaw, F. (2017) Splitting and lumping: An integrative taxonomic assessment of Malagasy chameleons in the Calumma guibei complex results in the new species C. gehringi sp. nov. Vertebrate Zoology, 67, 231-249.
  • Puillandre, N., Brouillet, S. & Achaz, G. (2021) ASAP: assemble species by automatic partitioning. Molecular Ecology Resources, 21, 609-620. https://doi.org/10.1111/1755-0998.13281
  • QGIS Development Team. (2022) QGIS Geographic Information System. Open Source Geospatial Foundation Project. http:// qgis.osgeo.org.
  • R Core Team. (2020) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http://www.R-project.org/.
  • Rabemananjara, F., Randriamahazo, H., Rahantamalala, J., Rahantalisoa, H., Rakotoarisoa, J.M., Rabibisoa, N.H.C. & Andreone, F. (2012) The conservation effort for two critically endangered amphibian species of the Ankaratra Massif, Boophis williamsi and Mantidactylus pauliani. FrogLog, 20, 29-31.
  • Rakotoarison, A., Scherz, M.D., Bletz, M.C., Razafindraibe, J.H., Glaw, F. & Vences, M. (2019) Diversity, elevational variation, and phylogenetic origin of stump-toed frogs (Microhylidae: Cophylinae: Stumpffia) on the Marojejy massif, northern Madagascar. Salamandra, 55, 115-123.
  • Rakotoarison, A., Scherz, M.D., Glaw, F., K ˆ hler, J., Andreone, F., Franzen, M., Glos, J., Hawlitschek, O., Jono, T., Mori, A., Ndriantsoa, S.H., Raminosoa Rasoamampionona, N., Riemann, J.C., R ˆ del, M.-O., Rosa, G.M., Vieites, D.R., Crottini, A. & Vences, M. (2017) Describing the smaller majority:Integrative taxonomy reveals twenty-six new species of tiny microhylid frogs (genus Stumpffia) from Madagascar. Vertebrate Zoology, 67, 271-398.
  • Rakotondravony, H.A. & Goodman, S.M. (2011) Rapid herpetofaunal surveys within five isolated forests on sedimentary rock in western Madagascar. Herpetological Conservation and Biology, 6, 297-311.
  • Rancilhac, L., Bruy, T., Scherz, M.D., Pereira, E.A., Preick, M., Straube, N., Lyra, M., Ohler, A., Streicher, J.W., Andreone, F., Crottini, A., Hutter, C.R., Randrianantoandro, J.C., Rakotoarison, A., Glaw, F., Hofreiter, M. & Vences, M. (2020) Target-enriched DNA sequencing from historical type material enables a partial revision of the Madagascar giant stream frogs (genus Mantidactylus). Journal of Natural History, 54, 87-118. https://doi.org/10.1080/00222933.2020.1748243
  • Randrianiaina, R.-D., Strauss, A., Glos, J., Glaw, F. & Vences, M. (2011) Diversity, external morphology and 'reverse taxonomy' in the specialized tadpoles of Malagasy river bank frogs of the subgenus Ochthomantis (genus Mantidactylus). Contributions to Zoology, 80, 17-65. https://doi.org/10.1163/18759866-08001002
  • Raselimanana, A.P. (2008) Herpetofaune des forets seches malgaches. Malagasy Nature, 1, 46-75.
  • Raselimanana, A.P., Vences, M. & Glaw, F. (2018) Liste des amphibiens connus dans 98 aires protegees terrestres de Madagascar / List of the known amphibians in 98 protected areas of Madagascar. In: Goodman, S.M., Raherilalao, M.J. & Wohlhauser, S. (Eds.) Les aires protegees terrestres de Madagascar : Leur histoire, description et biote / The terrestrial protected areas of Madagascar: Their history, description, and biota. Association Vahatra, Antananarivo, Madagascar,
  • Rasolonjatovo, S.M., Scherz, M.D., Rakotoarison, A., Glos, J., Raselimanana, A.P. & Vences, M. (2020) Field body temperatures in the rainforest frog Mantidactylus (Brygoomantis) bellyi from northern Madagascar: Variance and predictors. Malagasy Nature, 14, 57-68.
  • Rasolonjatovo, S.M., Scherz, M.D., Raselimanana, A.P. & Vences, M. (2018) Tadpole predation by Mantidactylus bellyi Mocquard, 1895 with brief description of the site and morphological measurements of the specimen. Herpetology Notes, 11, 747-750.
  • Rasolonjatovo, S.M., Scherz, M.D., Schmidt, R., Glos, J., Rakotoarison, A., Raselimanana, A.P. & Vences, M. (2022) Population diversification in the frog Mantidactylus bellyi on an isolated massif in northern Madagascar: genetic, morphological, bioacoustic and ecological evidence. PLoS One, 17, e0263764. https://doi.org/10.1371/journal.pone.0263764
  • Ratsoavina, F.M., Gehring, P.-S., Scherz, M.D., Vieites, D.R., Glaw, F. & Vences, M. (2017) Two new species of leaf-tailed geckos (Uroplatus) from the Tsaratanana mountain massif in northern Madagascar. Zootaxa, 4347, 446-464. https://doi.org/10.11646/zootaxa.4347.3.2
  • Ratsoavina, F.M., Glaw, F., Raselimanana, A.P., Rakotoarison, A., Vieites, D.R., Hawlitschek, O., Vences, M. & Scherz, M.D. (2020) Towards completion of the species inventory of smallsized leaf-tailed geckos: two new species of Uroplatus from northern Madagascar. Zootaxa, 4895, 251-271. https://doi.org/10.11646/zootaxa.4895.2.5
  • Relyea, R.A. (2001) The lasting effects of adaptive plasticity: predator-induced tadpoles become long-legged frogs. Ecology, 82, 1947-1955. h ttps ://doi.org/10.1890/0012-9658(2001)082[1947: TLEOAP]2.0.CO;2
  • Renner, S.S. (2016) A return to Linnaeus's focus on diagnosis, not description: the use of DNA characters in the formal naming of species. Systematic Biology, 65, 1085-1095. https://doi.org/10.1093/sysbio/syw032
  • Riedel, A. & Narakusumo, R.P. (2019) One hundred and three new species of Trigonopterus weevils from Sulawesi. Zookeys, 828, 1-153. https://doi.org/10.3897/zookeys.828.32200
  • Riedel, A., Sagata, K., Suhardjono, Y.R., Tanzler, R. & Balke, M. (2013) Integrative taxonomy on the fast track - towards more sustainability in biodiversity research. Frontiers in Zoology, 10, 15. https://doi.org/10.1186/1742-9994-10-15
  • Riedel, A., Tanzler, R., Balke, M., Rahmadi, C. & Suhardjono, Y.R. (2014) Ninety-eight new species of Trigonopterus weevils from Sundaland and the Lesser Sunda Islands. Zookeys, 467, 1-162. https://doi.org/10.3897/zookeys.828.32200
  • Riemann, J.C., Ndriantsoa, S.H., Raminosoa, N.R., R ˆ del, M.-O. & Glos, J. (2015) The value of forest fragments for maintaining amphibian diversity in Madagascar. Biological Conservation, 191, 707-715. https://doi.org/10.1016/j.biocon.2015.08.020
  • Rohland, N., Siedel, H. & Hofreiter, M. (2004) Nondestructive DNA extraction method for mitochondrial DNA analyses of museum specimens. BioTechniques, 36, 814-821. https://doi.org/10.2144/04365ST05
  • Rosa, G.M., Andreone, F., Crottini, A., Hauswaldt, J.S., Noel, J., Rabibisoa, N.H., Randriambahiniarime, M.O., Rebelo, R. & Raxworthy, C.J. (2012) The amphibians of the relict Betampona low-elevation rainforest, eastern Madagascar: an application of the integrative taxonomy approach to biodiversity assessments. Biodiversity and Conservation, 21, 1531-1559. https://doi.org/10.1007/s10531-012-0262-x
  • Rosa, G.M., Marquez, R. & Andreone, F. (2011) The astonishing calls of the frogs of Betampona. Museo Regionale di Scienze Naturali and Fonoteca Zoologica, Torino, Italy.
  • RStudio Team. (2019) RStudio: Integrated Development for R. RStudio, Inc., Boston, MA. http://www.rstudio.com/.
  • Salzburger, W., Ewing, G.B. & Von Haeseler, A. (2011) The performance of phylogenetic algorithms in estimating haplotype genealogies with migration. Molecular Ecology, 20, 1952-1963. https://doi.org/10.1111/j.1365-294X.2011.05066.x
  • Sanchez, E., Pr ˆ hl, H., Lddecke, T., Schulz, S., Steinfartz, S. & Vences, M. (2019) The conspicuous postmetamorphic coloration of fire salamanders, but not their toxicity, is affected by larval background albedo.Journal of Experimental Zoology, 332, 26-35. https://doi.org/10.1002/jez.b.22845
  • Santiago, J.R., de la Cruz-Lopez, L.E., Kuzmina, M. & Vergara-Silva, F. (2020) Morphological and molecular diagnostic characters reveal a new species of Pachyphytum (Crassulaceae). Haseltonia, 2019, 14-22. https://doi.org/10.2985/026.026.0103
  • Sarkar, I.N., Planet, P.J. & DeSalle, R. (2008) CAOS software for use in character-based DNA barcoding. Molecular Ecology Resources, 8, 1256-1259. https://doi.org/10.1111/j.1755-0998.2008.02235.x
  • Scheld, S., Perl, R.G.B., Rauhaus, A., Karbe, D., van der Straeten, K., Hauswaldt, J.S., Randrianiaina, R.D., Gawor, A., Vences, M. & Ziegler, T. (2013) Larval morphology and development of the Malagasy frog Mantidactylus betsileanus. Salamandra, 49, 186-200.
  • Scherz, M.D., Glaw, F., Hutter, C.R., Bletz, M.C., Rakotoarison, A., K ˆ hler, J. & Vences, M. (2019) Species complexes and the importance of Data Deficient classification in Red List assessments: the case of Hylobatrachus frogs. PLoS One, 14, e0219437. https://doi.org/10.1371/journal.pone.0219437
  • Scherz, M.D., Rakotoarison, A., Ratsoavina, F.M., Hawlitschek, O., Vences, M. & Glaw, F. (2018) Two new Madagascan frog species of the Gephyromantis (Duboimantis) tandroka complex from northern Madagascar. Alytes, 36, 130-158.
  • Scherz, M.D., Rasolonjatovo, S.M., K ˆ hler, J., Rancilhac, L., Rakotoarison, A., Raselimanana, A.P., Ohler, A., Preick, M., Hofreiter, M., Glaw, F. & Vences, M. (2020) 'Barcode fishing' for archival DNA from historical type material overcomes taxonomic hurdles, enabling the description of a new frog species. Scientific Reports, 10, 19109. https://doi.org/10.1038/s41598-020-75431-9
  • Scherz, M.D., Schmidt, L., Crottini, A., Miralles, A., Rakotoarison, A., Raselimanana, A.P., K ˆ hler, J., Glaw, F. & Vences, M. (2021) Into the Chamber of Horrors: A proposal for the resolution of nomenclatural chaos in the Scaphiophryne calcarata complex (Anura: Microhylidae), with a new species-level phylogenetic hypothesis for Scaphiophryninae. Zootaxa, 4938, 392-420. https://doi.org/10.11646/zootaxa.4938.4.2
  • Scherz, M.D., Vences, M., Borrell, J., Ball, L., Nomenjanahary, D.H., Parker, D., Rakotondratsima, M., Razafimandimby, E., Starnes, T., Rabearivony, J. & Glaw, F. (2017a) A new frog species of the subgenus Asperomantis (Anura: Mantellidae: Gephyromantis) from the Bealanana District of northern Madagascar. Zoosystematics and Evolution, 93, 451-466. https://doi.org/10.3897/zse.93.14906
  • Scherz, M.D., Vences, M., Rakotoarison, A., Andreone, F., K ˆ hler, J., Glaw, F. & Crottini, A. (2017b) Lumping or splitting in the Cophylinae (Anura: Microhylidae) and the need for a parsimony of taxonomic changes: a response to Peloso et al. (2017). Salamandra, 53, 479-483.
  • Schmidt, H., Strauss, A., Glaw, F., Teschke, M. & Vences, M. (2009) Description of tadpoles of five frog species in the subgenus Brygoomantis from Madagascar (Mantellidae: Mantidactylus). Zootaxa, 1988, 48-60. https://doi.org/10.11646/zootaxa.1988.1.4
  • Schneider, R.F. & Meyer, A. (2017) How plasticity, genetic assimilation and cryptic genetic variation may contribute to adaptive radiations. Molecular Ecology, 26, 330-350. https://doi.org/10.1111/mec.13880
  • Sharkey, M.J., Janzen, D.H., Hallwachs, W., Chapman, E.G., Smith, M.A., Dapkey, T., Brown, A., Ratnasingham, S., Naik, S., Manjunath, R., Perez, K., Milton, M., Hebert, P., Shaw, S.R., Kittel, R.N., Solis, M.A., Metz, M.A., Goldstein, P.Z., Brown, J.W., Quicke, D.L.J., van Achterberg, C., Brown, B.V. & Burns, J.M. (2021) Minimalist revision and description of 403 new species in 11 subfamilies of Costa Rican braconid parasitoid wasps, including host records for 219 species. ZooKeys, 1013, 1-665. https://doi.org/10.3897/zookeys.1013.55600
  • Soamiarimampionona, J., Sam, D.S., Dolch, R., Klymus, K., Rabemananjara, F., Robsomanitrandrasana, E., Rakotoarisoa, J.C. & Edmonds, D. (2015) Effects of three diets on development of Mantidactylus betsileanus larvae in captivity. Alytes, 32, 7-15.
  • Sofanova, Y., Bankevich, A. & Pevzner, P.A. (2015) dipSPAdes: assembler for highly polymorphic diploid genomes. Journal of Computational Biology, 22, 528-545. https://doi.org/10.1089/cmb.2014.0153
  • Solis-Lemus, C. & Ane, C. (2016) Inferring phylogenetic networks with Maximum Pseudolikelihood under incomplete lineage sorting. PLoS Genetics, 12, e1005896. https://doi.org/10.1371/journal.pgen.1005896
  • Solis-Lemus, C., Bastide, P. & Ane, C. (2017) PhyloNetworks: a package for phylogenetic networks. Molecular Biology and Evolution, 34, 3292-3298. https://doi.org/10.1093/molbev/msx235
  • Solis-Lemus, C., Knowles, L.L. & Ane, C. (2015) Bayesian species delimitation combining multiple genes and traits in a unified framework. Evolution, 69, 492-507. https://doi.org/10.1111/evo.12582
  • Stamatakis, A. (2014) RAxML Version 8: A tool for phylogenetic analysisandpost-analysisoflargephylogenies.Bioinformatics, 30, 1312-1313. https://doi.org/10.1093/bioinformatics/btu033
  • Stamper, C.E., Stevens, D.J., Downie, J.R. & Monaghan, P. (2008) The effects of competition on pre- and post-metamorphic phenotypes in the common frog. The Herpetological Journal, 18, 187-195.
  • Stephens, M., Smith, N.J. & Donnelly, P. (2001) A new statistical method for haplotype reconstruction from population data. American Journal of Human Genetics, 68, 978-989. https://doi.org/10.1086/319501
  • Streicher, J.W., Miller, E.C., Guerrero, P.C., Correa, C., Ortiz, J.C., Crawford, A.J., Pie, M.R. & Wiens, J.J. (2018) Evaluating methods for phylogenomic analyses, and a new phylogeny for a major frog clade (Hyloidea) based on 2214 loci. Molecular Phylogenetics and Evolution, 119, 128-143. https://doi.org/10.1016/j.ympev.2017.10.013
  • Stuart, S.N., Chanson, J.S., Cox, N.A., Young, B.E., Rodrigues, A.S.L., Fischman, D.L. & Waller, R.W. (2004) Status and trends of amphibian declines and extinction worldwide. Science, 306, 1783-1786. https://doi.org/10.1126/science.1103538
  • Sun, Y.-B., Xiong, Z.-J., Xiang, X.-Y., Liu, S.-P., Zhou, W.-W., Tu, X.-L., Zhong, L., Wang, L., Wu, D.-D., Zhang, B.-L., Zhu, C.-L., Yang, M.-M., Chen, H.-M., Li, F., Zhou, L., Feng, S.- H., Huang, C., Zhang, G.-J., Irwin, D., Hillis, D.M., Murphy, R.W., Yang, H.-M., Che, J., Wang, J. & Zhang, Y.-P. (2015) Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes. Proceedings of the National Academy of Sciences of the USA, 112, E1257. https://doi.org/10.1073/pnas.1501764112
  • Tessa, G., Crottini, A., Giacoma, C., Guarino, F.M., Randrianirina, J.E. & Andreone, F. (2017) Comparative longevity and age at sexual maturity in twelve rainforest frogs of the genera Boophis, Gephyromantis, and Mantidactylus (Anura: Mantellidae) from Madagascar. Phyllomedusa, 16, 13-21. https://doi.org/10.11606/issn.2316-9079.v16i1p13-21
  • Thomas, M., Raharivololoniaina, L., Glaw, F., Vences, M. & Vieites, D.R. (2005) Montane tadpoles in Madagascar: molecular identification and description of the larval stages of Mantidactylus elegans, Mantidactylus madecassus, and Boophis laurenti from the Andringitra Massif. Copeia, 2005, 174-183. https://doi.org/10.1643/CH-03-293R2
  • Vacher, J.-P., Chave, J., Ficetola, F.G., Sommeria-Klein, G., Tao, S., Thebaud, C., Blanc, M., Camacho, A., Cassimiro, J., Colston, T.J., Dewynter, M., Ernst, R., Gaucher, P., Gomes, J.O., Jairam, R., Kok, P.J.R., Lima, J.D., Martinez, Q., Marty, C., Noonan, B.P., Nunes, P.M.S., Ouboter, P., Recoder, R., Rodrigues, M.T., Snyder, A., Marques-Souza, S. & Fouquet, A. (2020) Largescale DNA-based survey of frogs in Amazonia suggests a vast underestimation of species richness and endemism. Journal of Biogeography, 47, 1781-1791. https://doi.org/10.1111/jbi.13847
  • Vences, M., Andreone, F., Glaw, F., Raminosoa, N., Randrianirina, J.E. & Vieites, D.R. (2002) Amphibians and reptiles of the Ankaratra Massif: reproductive diversity, biogeography and conservation of a montane fauna in Madagascar. Italian Journal of Zoology, 69, 263-284. https://doi.org/10.1080/11250000209356469
  • Vences, M. & Glaw, F. (1999) Variation in Mantidactylus madecassus Millot & Guibe, 1950, a little known Malagasy frog, with resurrection of Mantidactylus pauliani Guibe, 1974. Herpetological Journal, 9, 101-110.
  • Vences, M., Glaw, F. & Marquez, R. (2006) The Calls of the Frogs of Madagascar. 3 Audio CD's and booklet. Madrid, Spain, Fonoteca Zoologica, 44 pp.
  • Vences, M., Guayasamin, J.M., Miralles, A. & de la Riva, I. (2013) To name or not to name: Criteria to promote economy of change in Linnaean classification schemes. Zootaxa, 3636, 201-244. https://doi.org/10.11646/zootaxa.3636.2.1
  • Vences, M., Hildenbrand, A., Warmuth, K.M.,Andreone, F. & Glaw, F. (2018) A new riparian Mantidactylus (Brygoomantis) frog from the Tsaratanana and Manongarivo Massifs in northern Madagascar. Zootaxa, 4486, 575-588. https://doi.org/10.11646/zootaxa.4486.4.10
  • Vences, M., K ˆ hler, J., Pabijan, M., Bletz, M., Gehring, P.- S., Hawlitschek, O., Rakotoarison, A., Ratsoavina, F.M., Andreone, F., Crottini, A. & Glaw, F. (2017) Taxonomy and geographic distribution of Malagasy frogs of the Gephyromantis asper clade, with description of a new subgenus and revalidation of Gephyromantis ceratophrys. Salamandra, 53, 77-98.
  • Vences, M., Kosuch, J., Glaw, F., B ˆ hme, W. & Veith, M. (2003) Molecular phylogeny of hyperoliid treefrogs: biogeographic origin of Malagasy and Seychellean taxa and re-analysis of familial paraphyly. Journal of Zoological Systematics and Evolutionary Research, 41, 205-215. https://doi.org/10.1046/j.1439-0469.2003.00205.x
  • Vences, M., Miralles, A., Brouillet, S., Ducasse, J., Fedosov, A., Kharchev, V., Kostadinov, I., Kumari, S., Patmanidis, S., Scherz, M.D., Puillandre, N. & Renner, S.S. (2021) iTaxoTools 0.1: Kickstarting a specimen-based software toolkit for taxonomists. Megataxa, 6, 77-92. https://doi.org/10.11646/megataxa.6.2.1
  • Vences, M., Thomas, M., Bonett, R.M. & Vieites, D.R. (2005) Deciphering amphibian diversity through DNA barcoding: chances and challenges. Philosophical Transactions of the Royal Society B, 360, 1859-1868. https://doi.org/10.1098/rstb.2005.1717
  • Vences, M., Wahl-Boos, G., Hoegg, S., Glaw, F., Oliveira, E.S., Meyer, A. & Perry, S. (2007) Molecular systematics of mantelline frogs from Madagascar and the evolution of their femoral glands. Biological Journal of the Linnean Society, 92, 529-539. https://doi.org/10.1111/j.1095-8312.2007.00859.x
  • Vences, M., Wollenberg, K.C., Vieites, D.R. & Lees, D.C. (2009) Madagascar as a model region of species diversification. Trends in Ecology and Evolution, 24, 456-465. https://doi.org/10.1016/j.tree.2009.03.011
  • Vieites, D.R., Wollenberg, K.C., Andreone, F., K ˆ hler, J., Glaw, F. & Vences, M. (2009) Vast underestimation of Madagascar's biodiversity evidenced by an integrative amphibian inventory. Proceedings of the National Academy of Sciences of the USA, 106, 8267-8272. https://doi.org/10.1073/pnas.0810821106
  • Vijayakumar, S.P., Dinesh, K.P., Prabhu, M.V. & Shanker, K. (2014) Lineage delimitation and description of nine new species of bush frogs (Anura: Raorchestes, Rhacophoridae) from the Western Ghats Escarpment. Zootaxa, 2893, 451-488. https://doi.org/10.11646/zootaxa.3893.4.1
  • Watters, J.L., Cummings, S.T., Flanagan, R.L. & Siler, C.D. (2016) Review of morphometric measurements used in anuran species descriptions and recommendations for a standardized approach. Zootaxa, 4072, 477-495. https://doi.org/10.11646/zootaxa.4072.4.6
  • Weisrock, D.W., Rasoloarison, R.M., Fiorentino, I., Ralison, J.M., Goodman, S.M., Kappeler, P.M. & Yoder, A.D. (2010) Delimiting species without nuclear monophyly in Madagascar's mouse lemurs. PLoS One, 5, e9883. https://doi.org/10.1371/journal.pone.0009883
  • Wollenberg, K.C., Vieites, D.R., Glaw, F. & Vences, M. (2011) Speciation in little: the role of range and body size in the diversification of Malagasy mantellid frogs. BMC Evolutionary Biology, 11, 217. https://doi.org/10.1186/1471-2148-11-217
  • Wollenberg Valero, K.C., Garcia-Porta, J., Rodriguez, A., Arias, M., Shah, A., Randrianiaina, R.D., Brown, J.L., Glaw, F., Amat, F., Knzel, S., Metzler, D., Isokpehi, R.D. & Vences, M. (2017) Transcriptomic and macroevolutionary evidence for phenotypic uncoupling between frog life history phases. Nature Communications, 8, 15213. https://doi.org/10.1038/ncomms15213
  • World Bank. (2022) GDP per capita (current US$) - Madagascar. https://data.worldbank.org/indicator/NY.GDP.PCAP. CD?locations=MG, accessed: 2022-03-03.
  • Zamani, A., Vahtera, V., Saaksjarvi, I.E. & Scherz, M.D. (2021) The omission of critical data in the pursuit of 'revolutionary' methods to accelerate the description of species. Systematic Entomology, 46, 1-4. https://doi.org/10.1111/syen.12444
  • Zhang, C., Rabiee, M., Sayyari, E. & Mirarab, S. (2018) ASTRALIII: polynomial time species tree reconstruction from partially resolved gene trees. BMC Bioinformatics, 19, 153. https://doi.org/10.1186/s12859-018-2129-y
  • Zuckerkandl, E. & Pauling, L.B. (1965) Evolutionary divergence and convergence in proteins. In: Bryson, V. & Vogel, H.J. (Eds.) Evolving Genes and Proteins. Academic Press, New York, NY USA, pp. 97-166. https://doi.org/10.1016/B978-1-4832-2734-4.50017-6