Published December 15, 2022
| Version v1
Journal article
Restricted
Molecular and morphological notes on Opuntia ser. Streptacanthae (Cactaceae)
Creators
- 1. Posgrado en Biotecnología Agrícola, Instituto de Horticultura, Departamento de Fitotecnia, Universidad Autónoma Chapingo, Chapingo, México, 56230, Texcoco, Estado de México, México. & cesar.ramiro.mg@gmail.com; https://orcid.org/0000-0002-0256-0840
- 2. Posgrado en Biotecnología Agrícola, Instituto de Horticultura, Departamento de Fitotecnia, Universidad Autónoma Chapingo, Chapingo, México, 56230, Texcoco, Estado de México, México. & cgallegosvazquez@gmail.com; https://orcid.org/0000-0003-2506-8274
- 3. Posgrado en Biotecnología Agrícola, Instituto de Horticultura, Departamento de Fitotecnia, Universidad Autónoma Chapingo, Chapingo, México, 56230, Texcoco, Estado de México, México. & jomg1@yahoo.com.mx; https://orcid.org/0000-0001-9713-4758
- 4. Posgrado en Biotecnología Agrícola, Instituto de Horticultura, Departamento de Fitotecnia, Universidad Autónoma Chapingo, Chapingo, México, 56230, Texcoco, Estado de México, México. & abarrien@gmail.com; https://orcid.org/0000-0001-6555-7633
Description
Martínez-González, César Ramiro, Gallegos-Vázquez, Clemente, Mascorro- Gallardo, José O., Barrientos-Priego, Alejandro F. (2022): Molecular and morphological notes on Opuntia ser. Streptacanthae (Cactaceae). Phytotaxa 576 (1): 1-28, DOI: 10.11646/phytotaxa.576.1.1, URL: http://dx.doi.org/10.1094/PDIS-04-22-0755-PDN
Files
Restricted
The record is publicly accessible, but files are restricted to users with access.
Linked records
Additional details
Identifiers
- LSID
- urn:lsid:plazi.org:pub:FFF8B86CFFC4031C5515FFAEFFA2CA36
- URL
- http://publication.plazi.org/id/FFF8B86CFFC4031C5515FFAEFFA2CA36
References
- Anderson, E.F. (2001) The Cactus family. Timber Press, 776 pp.
- Arias, S., Gama S. & Guzman, U. (1997) Cactaceae. Flora del Valle de Tehuacan-Cuicatlan, Fasc. 14. Instituto de Biologia, Universidad Nacional Autonoma de Mexico. Mexico City, 146 pp.
- Arias, S., Gama, S., Guzman, U. & Vazquez, B. (2012) Cactaceae. Flora del Valle de Tehuacan-Cuicatlan, Fasc. 95. Instituto de Biologia, Universidad Nacional Autonoma de Mexico. Mexico City, 235 pp.
- Barcenas, R.T., Yesson, C.J. & Hawkins, J.A. (2011) Molecular systematics of the Cactaceae. Cladistics 27: 470-489. https://dx.doi.org/10.1111/j.1096-0031.2011.00350.x
- Benson, L. (1969) The Native Cacti of California. Stanford University Press, Staford, 243 pp.
- Benson, L. (1982) The Cacti of the United States and Canada. Stanford University Press, Staford, 1044 pp.
- Bouckaert, R., Heled, J., Kuhnert, D., Vaughan, T., Wu, C.-H., Xie, D., Suchard, M.A., Rambaut, A. & Drummond, A.J. (2014) BEAST 2: A software platform for Bayesian Evolutionary analysis. PLOS Computational Biology 10: e1003537. https://doi.org/10.1371/journal.pcbi.1003537
- Bravo-Hollis, H. (1937) Las Cactaceas de Mexico. Universidad Nacional Autonoma de Mexico. Mexico City, 755 pp.
- Bravo-Hollis, H. (1978) Las Cactaceas de Mexico, vol. 1. Universidad Nacional Autonoma de Mexico, Mexico City, 351 pp.
- Britton, N.L. & Rose, J.N. (1919) The Cactaceae: Description and illustrations of plants of the Cactus Family, vol. 1. Carnegie Institution, Washington, 236 pp.
- Dong, W., Xu, C., Li, C., Sun, J., Zuo, Y., Shi, S., Cheng, T., Guo, J. & Zhou, S. (2015) ycf1, the most promising plastid DNA barcode of land plants. Scientific Reports 5: 1-5. 8348. https://doi.org/10.1038/srep08348
- Frandsen, P.B., Calcott, B., Mayer, C. & Lanfear, R. (2015) Automatic selection of partitioning schemes for phylogenetic analyses using iterative k -means clustering of site rates. BMC Evolutionary Biology 15: 1-17. https://doi.org/10.1186/s12862-015-0283-7
- Garcia, E. (1973) Modificaciones al sistema de clasificacion climatica de Koppen. 4th Edition. Printed by the Author, Mexico City, 217 pp.
- Garcia-Morales, L.J., Garcia-Jimenez, J., Contreras-Medina, R., Alcantara-Ayala, O. & Luna-Vega, I. (2022) Diversity, distribution and conservation of the Cactaceae (Caryophyllales) from Tamaulipas, Mexico. Plant Biosystems 156: 1-17. https://doi.org/10.1080/11263504.2022.2056648
- Griffith, M.P. (2004) The origins of an important cactus crop, Opuntia ficus-indica (Cactaceae): new molecular evidence. American Journal of Botany 91: 1915-1921. https://doi.org/10.3732/ajb.91.11.1915
- Griffith, M.P. & Porter, M. (2009) Phylogeny of Opuntioideae (Cactaceae). International Journal of Plant Sciences 170: 107-116. http://dx.doi.org/10.1086/593048
- Griffiths, D. (1914) New species of Opuntia. Biological Society of Washington 27: 23-28.
- Guiggi, A. (2015) Genera nova et combinations novae in Cactaceis Austroamericanis ad subfamiliam Opuntioideae K. Schumann spectantibus IV. Supplementum to Cactology V: 1-4.
- Guzman, U.L., Arias, S. & Davila, P. (2003) Catalogo de cactaceas mexicanas. Universidad Nacional Autonoma de Mexico. Mexico City, 315 pp.
- Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
- Hernandez, H.M., Gomez, H.C., Barcenas, R.T., Puente, P. & Reyes, A.J. (2014) A checklist of the subfamily Opuntioideae (Cactaceae) from North and Central America. In: Hunt, D.R. (Ed.) Further Studies in Opuntioideae (Cactaceae). Succulent Plant Research 8: 185-200.
- Hernandez-Hernandez, T., Hernandez, H., De-Nova, J.A., Puente, R., Eguiarte, L.E. & Magallon, S. (2011) Phylogenetic relationships and evolution of growth form in Cactaceae (Caryophyllales, Eudicotyledoneae). American Journal of Botany 98: 44-61. https://dx.doi.org/10.3732/ajb.1000129
- Huelsenbeck, J.P. & Ronquist, F. (2001) MrBayes: Bayesian inference of phylogeny. Bioinformatics 17 (8): 754-755. https://doi.org/10.1093/bioinformatics/17.8.754
- Huelsenbeck, J.P., Larget, B. & Alfaro, M.E. (2004) Bayesian phylogenetic model selection using reversible jump Markov Chain Montecarlo. Molecular Biology and Evolution 21: 1123-1133. https://doi.org/10.1093/molbev/msh123
- Hunt, D. (1999) CITES Cactaceae, checklist, 2nd Edition. Royal Botanical Gardens, Kew, 315 pp.
- Hunt, D. (2006) The New cactus lexicon. International Cactaceae Systematics Group, Milbourne Port, 373 pp.
- Hunt, D. (2014) Further Studies in Opuntioideae (Cactaceae). Succulent Plant Research 8: 185-200.
- Katoh, K. & Standley, D.M. (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30 (4): 772-780. https://doi.org/10.1093/molbev/mst010
- Katoh, K., Misawa, K., Kuma, K. & Miyata, T. (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research 30 (14): 3059-3066. https://doi.org/10.1093/nar/gkf436
- Katoh, K., Rozewicki, J. & Yamada, K.D. (2017) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20 (4): 1160-1166. https://doi.org/10.1093/bib/bbx108
- Kohler, M., Font, F. & Souza-Chies, T.T. (2018) First record of Opuntia rioplatense (Cactaceae) for the Brazilian flora. Phytotaxa 379 (4): 293-296. https://doi.org/10.11646/phytotaxa.379.4.3
- Kohler, M., Font, F., Puente-Martinez, R. & Majure, L.C. (2021a) "That´s Opuntia, that was!", again: a new combination for an old and enigmatic Opuntia s.l. (Cactaceae). Phytotaxa 505 (3): 262-274. https://doi.org/10.11646/phytotaxa.505.3.2
- Kohler, M., Oakley, L.J., Font, F., Las Penas, M.L. & Majure, L.C. (2021b) On the continuum of evolution: a putative new hybrid speciation event in Opuntia (Cactaceae) between a native and an introduced species in southern South America. Systematics and Biodiversity 19 (8): 1026-1039. https://doi.org/10.1080/14772000.2021.1967510
- Korotkova, N., Aquino, D., Arias, S., Eggli, U., Franck, A., Gomez-Hinostrosa, C., Guerrero, P.C., Hernandez, H.M., Kohlbecker, A., Kohler, M., Luther, K., Majure, L.C., Muller, A., Metzing, D., Nyffeler, R., Sanches, D., Schlumpberger, B. & Berendsohn, W.G. (2021) Cactaceae at Caryophyllales.org-a dynamic online species-level taxonomic backbone for the family. Willdenowia 51: 251- 270. https://doi.org/10.3372/wi.51.51208
- Lanfear, R., Calcott, B., Kainer, D., Mayer, C. & Stamatakis, A. (2014) Selecting optimal partitioning schemes for phylogenomic datasets. BMC Evolutionary Biology 14: 1-14. https://doi.org/10.1186/1471-2148-14-82
- Lanfear, R., Frandsen, P.B., Wright, A.M., Senfeld, T. & Calcott, B. (2016) PartitionFinder 2: New methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and Evolution 34 (3): 772-773. https://doi.org/10.1093/molbev/msw260
- Lemaire, C. (1839) Cactearum genera nova speciesque novae et omnium in horto Monvilliano cultarum ex affinitatibus naturalibus ordinatio nova indexque methodicus. Lutetiis, Paris, 115 pp.
- Lode, J. (2015) Taxonomy of the Cactaceae (Supplement). Alphabetical INDEX of taxa in current usage and their synonyms. Cactus Adventures International, Barcelona, 46 pp.
- Maddison, W.P. & Maddison, D.R. (2021) Mesquite: a modular system for evolutionary analysis. Version 3.70. Available from: https:// mesquiteproject.org/ (accesed 16 April 2021)
- Majure, L. & Puente, R. (2014) Phylogenetic relationships and morphological evolution in Opuntia s.str. and closely related members of tribe Opuntieae. Succulent Plant Research 8: 9-30.
- Majure, L., Puente, R., Griffith, M.P., Judd, W.S., Soltis, P.S. & Soltis, D.E. (2012) Phylogeny of Opuntia s.s. (Cactaceae): clade delineation, geographic origins, and reticulate evolution. American Journal of Botany 99: 847-864. https://doi.org/10.3732/ajb.1100375
- Majure, L., Puente, R., Griffith, M.P., Soltis, D.E. & Judd, W.S. (2013) Opuntia lilae, another Tacinga hidden in Opuntia s.l. Systematic Botany 38: 444-450.
- Majure, L., Kohler, M. & Font, F. (2020) North American Opuntias (Cactaceae) in Argentina? Remarks on the phylogenetic position of Opuntia penicilligera and a closer look at O. ventanensis. Phytotaxa 428 (3): 279-289. https://doi.org/10.11646/phytotaxa.428.3.9
- Martinez-Gonzalez, C.R. & Morales-Sandoval, J. (2021) Taxonomic status of two controversial species of Opuntia (Cactaceae) from Mexico based on morphological and molecular data. Bradleya 39: 23-35.
- Martinez-Gonzalez, C.R., Gallegos-Vazquez, C., Luna-Vega, I. & Garcia-Sandoval, R. (2015a) Opuntia leiascheinvariana, una nueva especie de Cactaceae del Estado de Hidalgo, Mexico. Botanical Sciences 93 (3): 517-529.
- Martinez-Gonzalez, C.R., Luna-Vega, I., Gallegos-Vazquez, C. & Garcia-Sandoval, R. (2015b) Opuntia delafuentiana (Cactaceae: Opuntioideae), a new xoconostle from central Mexico. Phytotaxa 231 (3): 230-244.
- Martinez-Gonzalez, C.R., Ramirez-Mendoza, R., Jimenez-Ramirez, J., Gallegos-Vazquez, C. & Luna-Vega, I. (2017) Improved method for genomic DNA extraction for Opuntia Mill. (Cactaceae). Plant Methods 13: 1-10. https://doi.org/10.1186/s13007-017-0234-y
- Martinez-Gonzalez, C.R., Gallegos-Vazquez, C., Scheinvar, L., Muniz-Diaz de Leon, M.E. & Jimenez-Ramirez, J. (2019) Re-evaluation of Opuntia matudae (Cactaceae). Phytotaxa 423 (3): 158-170. https://doi.org/10.11646/phytotaxa.423.3.4
- Martinez-Gonzalez, C.R., Muniz-Diaz de Leon, M.E., Gonzalez-Martinez, C.A., Jimenez-Ramirez, J., Morales-Sandoval, J. & GallegosVazquez, C. (2020) Phylogenetic placement and new data on macro- and micromorphology of Opuntia joconostle (Cactaceae). Bradleya 38: 158-169. https://doi.org/10.25223/brad.n38.2020.a17
- Miller, P. (1754) The gardeners dictionary: containing the methods of cultivating and improving all sorts of trees, plants, and flowers, for the kitchen, fruit, and pleasure gardens, and also those which are used in medicine: with directions for the culture of vineyards, and making wine in England. Printed by the author, London, no pagination. https://doi.org/10.5962/bhl.title.79061
- Mercado-Munoz, F., Leon de la Luz, J.L., Rebman, J.P., Medel Narvaez, A. & Campos Ramos, R. (2021) Two new species of nopal (Opuntia, Cactaceae) from the Baja California Peninsula (Mexico). Phytotaxa 508 (3): 266-278. https://doi.org/10.11646/phytotaxa.508.3.2
- Muller, K., Quandt, D., Muller, J. & Neinhuis, C. (2005) PhyDE®-Phylogenetic data editor. Program distributed by the authors, version 10.0. Available from: https://www.phyde.de (accessed 16 April 2021)
- Nyffeler, R. (2002) Phylogenetic relationships in the cactus family (Cactaceae) based on evidence from trnK/ matK and trnL-trnF sequences. American Journal of Botany 89 (2): 312-326.
- Nyffeler, R. & Eggli, U. (2010) A farewell to dated ideas and concepts: molecular phyogenetics and a revised suprageneric classification of the family Cactaceae. Schumannia 6: 109-149.
- Ochoterena, I. (1922) Las Cactaceas de Mexico. Editorial Cultura. Mexico City, 189 pp.
- Parfitt, B.D. & Pinkava, D.J. (1988) Nomenclatural systematic reassessment of Opuntia engelmanii and Opuntia lindheimeri (Cactaceae). Madrono 35: 342-349.
- Pfeiffer, L.G.K. (1837) Enumeratio diagnostica Cactearum Hucusque Cognitarum. Sumtibus Ludovici Oehmigke, Berlin, 192 pp. https://doi.org/10.5962/bhl.title.147375
- Pinkava, D.J. (1996) Nomenclatural changes in Opuntia (Cactaceae). Haseltonia 4: 103-104.
- Pinkava, D.J. (2002) On the evolution of the continental North American Opuntioideae. Studies in the Opuntioideae (Cactaceae). Succulent Plant Research 6: 59-98.
- Porras-Florez, D., Albesiano, S. & Arrieta-Violet, L. (2020) Typification of the name Opuntia soederstromiana (Cactaceae), a new record for the Flora of Colombia. Phytotaxa 452 (2): 116-123. https://doi.org/10.11646/phytotaxa.452.2.1
- Rambaut, A., Suchard, M.A., Xie, D. & Drummond, A.J. (2014) Tracer v1.6. Available from: http://beast.bio.ed.ac.uk/Tracer (accessed 16 April 2021)
- Reyes-Aguero, J.A., Aguirre, J.R., Carlin, F. & Gonzalez A. (2009) Catalogo de las principales variantes silvestres y cultivadas de Opuntia en la Altiplanicie Meridional de Mexico. UASLP., SAGARPA and CONACYT, San Luis Potosi, Mexico, 350 pp.
- Rzedowski, J. (1978) Vegetacion de Mexico. Limusa, Mexico City, 432 pp.
- Salm-Dyck, J. (1834) Hortus Dyckensis oder Verzeichniss der in dem botanischen Garten zu Dyck wachsenden Pflanzen. Dusseldorf, Arnz.
- Scheinvar, L. (1974) Opuntia heliabravoana, una especie nueva de Cactaceae. Anales del Instituto de Biologia, Universidad Nacional Autonoma de Mexico, Serie Botanica 45: 75-86.
- Scheinvar, L. (1976) Opuntia rzedowskii 'Nopal de pedregal', una especie nueva de Cactaceae.Anales del Instituto de Biologia, Universidad Nacional Autonoma de Mexico, serie Botanica 53: 123-136.
- Scheinvar, L. (1981) Species, variedades y combinaciones nuevas de cactaceas del Valle de Mexico. Phytologia 49: 324-328.
- Scheinvar, L. (1982) Redescubrimiento de la Opuntia spinulifera Salm-Dyck. Anales del Instituto de Biologia, Universidad Nacional Autonoma de Mexico, Serie Botanica 47: 1-20.
- Scheinvar, L. (1985) Cactaceae. In: Rzedowski, J. & Calderon de Rzedowski, G. (Eds.) La flora del Valle de Mexico, vol. 2, Instituto de Ecologia, A. C. y Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional. City, pp. 93-115.
- Scheinvar, L. (1987) Redescubrimiento de Opuntia oligacantha Forster en el Valle de Mexico y en la Altiplanicie Mexicana. Anales del Instituto de Biologia, Universidad Nacional Autonoma de Mexico, Serie Botanica 57: 109-122.
- Scheinvar, L. (1999) Opuntia zamudioi, una nueva especie de Queretaro. Cactaceas y Suculentas Mexicanas 44: 88-93.
- Scheinvar, L. (2002) Opuntia stricta (Haw.) Haw. subsp. esparzae, una nueva subespecie de las dunas del rio Conca, Arroyo Seco, Queretaro, Mexico. Cactaceas y Suculentas Mexicanas 47: 94-102.
- Scheinvar, L. (2004) Flora cactologica del estado de Queretaro. Diversidad y riqueza. Fondo de Cultura Economica, Mexico, 390 pp.
- Scheinvar, L. & Olalde, G. (2008) Tipificacion de algunas cactaceas del estado de Guerrero. Cactaceas y Suculentas Mexicanas 53: 36-50.
- Scheinvar, L. & Rodriguez-Fuentes, A. (2003) Nueva subespecie de Opuntia streptacantha (Cactaceae) de la altiplanicie mexicana. Anales del Instituto de Biologia, Universidad Nacional Autonoma de Mexico, Serie Botanica 74: 303-311.
- Scheinvar, L., Gallegos-Vazquez, C., Olalde-Parra, G. & Rodriguez-Fuentes, A. (2010) Opuntia ser, Streptacanthae (Cactaceae)-neotypifications and taxonomic notes for four species. Schumannia 6: 277-296.
- Schmitz-Linneweber, C., Maier, R., Jean-Pierre, A., Cottet, A., Herrmann, R. & Mache, R. (2001) The plastid chromosome of spinach (Spinacia oleracea): complete nucleotide sequence and gene organization. Plant Molecular Biology 45: 307-315.
- Shaw, J., Lickey, E.B., Schilling, E.E. & Small, R.L. (2007) Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: The tortoise and the hare III. American Journal of Botany 94: 275-288. https://doi.org/10.3732/ajb.94.3.275
- Stamatakis, A. (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30: 1312-1313. https://doi.org/10.1093/bioinformatics/btu033
- Stuppy, W. (2002) Seed characters and generic classification of the Opuntioideae (Cataceae). Succulent Plant Research 6: 25-58.
- Taberlet, P.G., Ludovic, P., Guy, P. & Bouvet, J. (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109. https://doi.org/10.1007/BF00037152
- Thiers, B. (2022) Index herbariorum: a global directory of public herbaria and associated staff. New York Botanical Gardenʾs Virtual Herbarium. Available from: http://sweetgum.nybg.org/ih (accessed 27 July 2022)
- Weber, F.A.C. (1898) Opuntia Tournef. In: Bois, D. (Ed.) Dictionnaire d´Horticulture. P. Klincksieck, Paris, pp. 892-899.
- White, TJ., Bruns, T.D., Lee, S. & Taylor, J.W. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenies. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T. (Eds.) PCR Protocols: a guide to methods and applications. Academic Press, San Diego, pp. 135-322.
- Wilcox, C.D., Dove, S., McDavis, W. & Greer, D. (2002) UTHSCSA. Image Tool. version 3.0. University of Texas Health Center, San Antonio, 56 pp.
- Zhang, Z., Schwartz, S., Wagner, L. & Miller, W. (2000) A greedy algorithm for aligning DNA sequences. Journal of Computational Biology 7: 203-214.