Published November 25, 2022
| Version v0.13.3
Software
Open
peterjc/thapbi-pict: THAPBI PICT v0.13.3
Authors/Creators
- 1. The James Hutton Institute
- 2. University of Strathclyde
- 3. University of St Andrews
Description
Released on PyPI on 2022-11-25:
https://pypi.org/project/thapbi-pict/0.13.3/
Introduces a new sample-tally command which is now used in the pipeline in place of the older fasta-nr command. This outputs a BIOM style TSV with one row per ASV giving the sample abundances as columns, with the ASV sequence as the final column. This TSV file is now used as input to the summary command, rather than scanning the per-sample intermediate FASTA files.
The motivation behind this change is mostly as a stepping stone towards planned future functionality.
Files
peterjc/thapbi-pict-v0.13.3.zip
Files
(4.6 MB)
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md5:8e6f80bb8b1fc349d4d573ae5c8ce98b
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Additional details
Related works
- Is supplement to
- https://github.com/peterjc/thapbi-pict/tree/v0.13.3 (URL)