Published November 23, 2022
| Version v1.0.0
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COVID-19 Knowledge Graph: A semantic resource embedding biological and chemical entities
- 1. Fraunhofer Institute of Translation Medicine and Pharmacology
Description
A Knowledge graph representation of compounds and associated biological entities in the BY-COVID and EOSC Future project.
Current status
- Number of Nodes: 35952
- Number of Edges: 279462
- Human Proteins: 1347
- Assay: 15835
- Chemical/Compound: 4096
- Mechanism of Action: 739
- Pathway: 1513
- Disease: 1585
- SideEffect: 7420
- Biological Process: 2085
- Molecular Function: 1332
Please check the BY_COVID_update_August.ipynb for understanding step wise process of KG generation and KG statistics. The KG has been exported to formats such as graphml, sif and so on for visualizations in other platforms. For example, the graphml file can be imported to Cytoscape directly. These files are located in 'data\export' folder.
Files
Fraunhofer-ITMP/BY-COVID-KG-v1.0.0.zip
Files
(79.5 MB)
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Additional details
Related works
- Is derived from
- Software: https://github.com/Fraunhofer-ITMP/BY-COVID-KG/blob/main/BY_COVID_update_August.ipynb (URL)
- Is supplement to
- Software: https://github.com/Fraunhofer-ITMP/BY-COVID-KG (URL)