Forecasting individual progression trajectories in Alzheimer's disease – software and source data
Creators
- 1. Sorbonne Université, Institut du Cerveau - Paris Brain Institute – ICM, CNRS, Inria, Inserm, AP-HP, Hôpital Pitié-Salpêtrière, Paris, France
Description
# Content
The repository contains the frozen version of the Python libraries that were used to generate results of the article Forecasting individual progression trajectories in Alzheimer’s disease, Maheux E., et al. (2022)
It contains two zipped Python packages:
- leaspy for training and predicting progression trajectories based on AD Course Map, Linear mixed model and No-change prediction models
- rnn-ad for training and predicting progression trajectories based on RNN-AD model
Read-me and licence files are provided within each package.
It also contains the source_data.xslx that were used to generate all figures in the main manuscript, as well as in the supplementary information.
# Data availability
Please note that data and trained models are **NOT** provided, due to confidentiality issues.
- The ADNI and AIBL data used in this study are available in the database of the laboratory of neuroimaging at the university of Southern California under accession code at http://adni.loni.usc.edu.
- The J-ADNI data used in this study are available in the NBDC Human Database under accession code at http://humandbs.biosciencedbc.jp/en/.
- The PharmaCog data used in this study are available in the NeuGRID2 platform under access code at https://www.neugrid2.eu/ (https://doi.org/10.17616/R31NJN1E)
- The MEMENTO data used in this study are available in Dementia Platform UK under accession code at https://portal.dementiasplatform.uk/CohortDirectory/Item?fingerPrintID=MEMENTO
# Bugs and questions
In case you have any question regarding the software or the source data, please contact the corresponding author of the article.
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Additional details
Funding
- Agence Nationale de la Recherche
- IHU-A-ICM – Institut de Neurosciences Translationnelles de Paris ANR-10-IAHU-0006
- European Commission
- LEASP – Learning spatiotemporal patterns in longitudinal image data sets of the aging brain 678304
- Agence Nationale de la Recherche
- E-DADS – Early Detection of Alzheimer’s Disease Subtypes ANR-19-JPW2-0002
- European Commission
- VirtualBrainCloud – Personalized Recommendations for Neurodegenerative Disease 826421
- Agence Nationale de la Recherche
- PRAIRIE – PaRis Artificial Intelligence Research InstitutE ANR-19-P3IA-0001