Published October 5, 2022
| Version v0.3.0
Software
Open
SchlossLab/schtools: schtools 0.3.0
Creators
- 1. @SchlossLab
- 2. University of Michigan
Description
- New function
log_snakemake()redirects all output to a rule-specific log file when called by a Snakemake rule (#35, @kelly-sovacool). - New function
pool_taxon_counts()pools OTU counts at a particular taxonomic level (e.g. genus, phylum, etc.) to enable comparing analyses at different taxonomic resolutions, as seen in https://doi.org/10.1128/mbio.03161-21 (#37, @kelly-sovacool). - New function
calc_relabun()calculates OTU relative abundances (#38, @kelly-sovacool). - New custom themes for ggplot2:
theme_sovacool()(#39, @kelly-sovacool)theme_lucas()(#40, @sklucas)
Full Changelog: https://github.com/SchlossLab/schtools/compare/v0.2.1...v0.3.0
Files
SchlossLab/schtools-v0.3.0.zip
Files
(7.9 MB)
| Name | Size | Download all |
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md5:ad5e94d35cf55a9641edcea53415df88
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Additional details
Related works
- Is supplement to
- https://github.com/SchlossLab/schtools/tree/v0.3.0 (URL)