Published August 28, 2022 | Version v2
Other Open

A FAIR data model for PRISMA (Personalised RISk-based MAmmascreening) Study

  • 1. Center for Molecular and Biomolecular Informatics, Radboud University Medical Center
  • 2. Department of Health Evidence, Radboud University Medical Center
  • 3. AmsterdamUMC, Amsterdam
  • 4. Radboud Biobank, Radboud University Medical Center
  • 5. Data Stewardship, Department of Information Management, Radboud University Medical Center

Description

In the Netherlands, women aged 50-75 years are invited to receive breast cancer screening every two years. The PRISMA (Personalised RISk-based MAmmascreening) study was designed to investigate the added value of risk-based mammography screening. 43,000 screened women completed a web-based questionnaire comprising established risk factors and PROMs for breast cancer. There is no universally accepted data model for the collection of breast cancer risk factors.

Objective:

  • To reduce ambiguity of data schemas in the domain and increase secondary use of client-reported outcomes through FAIRification, i.e. ensuring data are Findable, Accessible, Interoperable, and Reusable.
  •  To create a FAIR semantic data model out of the PRISMA questionnaire.

Solution:

Step 1. 43,000 screened women completed a web-based questionnaire comprising established risk factors and PROMs for breast cancer.

Step 2. After several inventory meetings with different stakeholders, a consensus was reached on which data elements were important criteria to discover, share and reuse the PRISMA data. The resulting 67 data elements were grouped into 15 main classes

Linked Data representations for each CDE were constructed, by mapping to existing ontological terms

Step 3. The data elements identified in the PRISMA study can be instantiated according to the core elements (role, entity, process, measurement, attribute) in SIO and connected using the established property.

Added Value:

  • FAIR data model, a potential template for breast cancer research groups to other PROMs and Real-World Experience questionnaires.

Next steps:

  • create use cases that the PRISMA semantic data schema can support
  • consider the interoperability with other standard, like the electronic health record (EHR)

Notes

Funding: 1. The Netherlands X-omics Initiative is (partially) funded by the Dutch Research Council (NWO), project 184.034.019. 2. The PRISMA Studies is partially funded by the Dutch Cancer Society (KWF; Grant 12522).

Files

ISMB2022Poster.pdf

Files (177.0 MB)

Name Size Download all
md5:93c3e50707dcdbcd11d52b7b88b24749
444.2 kB Preview Download
md5:4e81b2b2965b9a9cccaa7b8b29f7a73c
176.6 MB Preview Download

Additional details

Funding

European Commission
EJP RD - European Joint Programme on Rare Diseases 825575