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Published August 15, 2022 | Version v0.4.6
Software Open

cosanlab/nltools: 0.4.6

Creators

  • 1. Dartmouth College
  • 2. @stampsy
  • 3. National Taiwan University
  • 4. University of California
  • 5. @ContextLab @cosanlab

Description

Changes Fixes
  • Fixed warnings from onsets_to_dm as error-checking wasn't quite right
  • Fixed deprecated nilearn warnings
  • Fixed deprecated nibabel .get_affine() -> .affine
New

Brain_Data('brain.h5')

User loads h5 that contains mask but also sets mask argument. Now mask value takes precedence over whatever mask is in h5 so we issue a warning to the user letting them know on load

Brain_Data('brain.h5', mask='path/to/nifti/mask.nii.gz')

UserWarning(...)

User loads h5 that does NOT contain a mask and doesnt set the mask argument so the default MNI mask is used, similar to nifti files This is an implicit fallback just like with niftis

Brain_Data('brain_nomask.h5')

User loads h5 that does NOT contain mask but also sets mask argument Mask value is used to learn transformation like niftis No need to warn them about anything

Brain_Data('brain_nomask.h5', mask='path/to/nifti/mask.nii.gz') ```

Files

cosanlab/nltools-v0.4.6.zip

Files (3.4 MB)

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md5:fb61370e2a5a57f6298149b2cb5ce129
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Additional details

Related works

Is supplement to
https://github.com/cosanlab/nltools/tree/v0.4.6 (URL)