Published April 16, 2025 | Version v3.0.0
Software Open

ytakemon/GRETTA: GRETTA 3.0.0

Authors/Creators

  • 1. Michael Smith Laboratories
  • 2. UBC MSL

Description

GRETTA now supports RNAi screns!

  • Formatted RNAi data can be downloaded from https://www.bcgsc.ca/downloads/ytakemon/GRETTA/RNAi/
  • A script used to format is availale in DepMap_data_versions/RNAi/.
  • Turn on the option to perform RNAi screens using the following optioons select_cell_lines(rnai_screen = TRUE), GI_screen(rnai_screen = TRUE), and GI_screen_perms(rnai_screen = TRUE). Details can be found in help(GI_screen).
  • Note: The DepMap Consortium no longer performs RNAi screens therefore the data available are fixed.

Files

ytakemon/GRETTA-v3.0.0.zip

Files (795.9 kB)

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Additional details

Related works

Is supplement to
Software: https://github.com/ytakemon/GRETTA/tree/v3.0.0 (URL)

Software

Repository URL
https://github.com/ytakemon/GRETTA