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Published December 26, 2016 | Version v1
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Gene annotation files for Fraxinus excelsior (European ash) genome assembly BATG-0.5

Description

Gene annotation files for Fraxinus excelsior genome assembly v. BATG-0.5, published in Nature (doi:10.1038/nature20786). These files were previously hosted on the Ash Tree Genomes website (http://www.ashgenome.org/transcriptomes) and first made available for download via that site on 2016-02-08.

The following annotation files are available:

### GFF file of all gene models (all isoforms)
Fraxinus_excelsior_38873_TGAC_v2.gff3

### FASTA file of all cDNA sequences (all isoforms)
Fraxinus_excelsior_38873_TGAC_v2.gff3.cdna.fa

### FASTA file of all CDS DNA sequences (all isoforms)
Fraxinus_excelsior_38873_TGAC_v2.gff3.cds.fa

### FASTA file of all peptide sequences (all isoforms)
Fraxinus_excelsior_38873_TGAC_v2.gff3.pep.fa

### Functional annotation for each gene model (all isoforms)
Fraxinus_excelsior_38873_TGAC_v2.gff3.functional_annotation.tsv

### GFF file of all gene models (longest isoform only)
Fraxinus_excelsior_38873_TGAC_v2.longestCDStranscript.gff3

### FASTA file of all cDNA sequences (longest isoform only)
Fraxinus_excelsior_38873_TGAC_v2.longestCDStranscript.gff3.cdna.fa

### FASTA file of all CDS DNA sequences (longest isoform only)
Fraxinus_excelsior_38873_TGAC_v2.longestCDStranscript.gff3.cds.fa

### FASTA file of all peptide sequences (longest isoform only)
Fraxinus_excelsior_38873_TGAC_v2.longestCDStranscript.gff3.pep.fa

### GFF file for gene models identified as probable transposable element related sequences (excluded from the other files)
Fraxinus_excelsior_38873_TGAC_v2.transposable_elements.gff3


NB: The annotation files include preliminary annotations for genes within the organellar scaffolds (gene models FRAEX38873_v2_000400370-FRAEX38873_v2_000401330), which were not reported in the publication of the BATG0.5 assembly (doi:10.1038/nature20786).

Files

Files (123.0 MB)

Additional details

Related works

Is published in
Journal article: 10.1038/nature20786 (DOI)
References
Dataset: 10.5281/zenodo.4530572 (DOI)

Funding

Ash tree genomics: an urgent need NE/K01112X/1
UK Research and Innovation
Identifying genomic resources against pests and pathogens in tree genera: a case study in Fraxinus BB/L012162/1
UK Research and Innovation

References

  • doi:10.1038/nature20786