Data related to "Upper cortical layer-driven network impairment in schizophrenia" paper, by Batiuk, Tyler et al.
Creators
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Mykhailo Y. Batiuk1
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Teadora Tyler2
- Katarina Dragicevic3
- Shenglin Mei4
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Rasmus Rydbirk3
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Viktor Petukhov3
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Deviatiiarov Ruslan5
- Dora Sedmak6
- Erzsebet Frank7
- Virginia Feher7
- Nikola Habek6
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Qiwen Hu8
- Anna Igolkina9
- Lilla Roszik7
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Ulrich Pfisterer10
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Garcia-Gonzalez, Diego10
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Zdravko Petanjek6
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Istvan Adorjan11
- Peter V. Kharchenko8
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Konstantin Khodosevich10
- 1. EPFL, Lausanne, Switzerland
- 2. Semmelweis University, Budapest, HU
- 3. BRIC, Copenhagen University, Denmark
- 4. Harvard Medical School, Boston, US
- 5. Endocrinology Research Centre, Moscow, Russia
- 6. Croatian Institute for Brain Research & Center of Excellence for Basic, Clinical and Translational Neuroscience, School of Medicine, University of Zagreb, Zagreb, Croatia
- 7. Department of Anatomy, Histology and Embryology, Semmelweis University, Budapest, Hungary
- 8. Department of Biomedical Informatics, Harvard Medical School, Boston, Massachusetts, USA
- 9. Department of Biomedical Informatics, Harvard Medical School, Boston, Massachusetts, USA; St. Petersburg Polytechnical University, St. Petersburg, Russia
- 10. Biotech Research and Innovation Centre (BRIC), Faculty of Health and Medical Sciences, University of Copenhagen, Denmark
- 11. Department of Anatomy, Histology and Embryology, Semmelweis University, Budapest, Hungary;
Description
This is Data for "Upper cortical layer-driven network impairment in schizophrenia" paper, by Batiuk, Tyler et al., 2022
This repository contains:
Supplementary Dataset Tables 1-4 (Supplementary_Dataset_Tables_1-4.xlsx). They contain DE genes and GO terms from snRNA-seq and visium analysis.
Single nuclei and Visium spatial transcriptomics sequencing data (snRNA-seq_and_spatial_transcriptomics.zip) containing raw count matrices of snRNA-seq samples; Conos object with aligned snRNA-seq samples; snRNA-seq single nuclei cell subtype annotations; raw count matrices of Visium spatial transcriptomics samples; Visium spatial transcriptomics manual histological cortical layer annotations; and 10x Genomics spaceranger count pipeline output for Visium spatial transcriptomics data.
Histological images of H&E stained Visium spatial transcriptomics samples mounted on visium slide capture area (visium_sample_images.zip)