A simple procedure to detect, test for the presence of stuttering, and cure stuttered data with spreadsheet programs
Description
Parameter for the first simulation with Easypop are in the file "TestStutterDioeciousNoStutter-n1000N100-1.txt"; The file "TestStutterDioeciousNoStutter-n1000N100-1.equ gives population genetics parameters measured at each generation of the first replicate; "TestStutterDioeciousNoStutter-n1000N100-1.gen" and "TestStutterDioeciousNoStutter-n1000N100-1.dat" are the genepop and Fstat files generated by this simulation, respectively. The file "TestStutterDioecious-n1000N100-1-10%Stuttering.xlsx", is a template for generating 10% stuttering in the first replicate of the first Easypop simulation; and the file "TestStutterDioeciousNoStutter-n1000N100-1-FstatRes.xlsx" is a template of stuttering detection (together with LD tests and other measured done by Fstat), for this first replicate of the fists simulation with 10 % stuttering.
Synthetic results for dioecious and monoecious simulations are in Excel format in the supplementary file S1 "SynthesisStutteringTestSexualsSupFileS1.xlsx".
Synthetic results for clonal simulations are in Excel format in the supplementary file S2 "StutteringClonesSynthesisSupFileS2.xlsx".
Pooling protocols for curing simulated data are in Excel files that were compressed in a zipped file, supplementary file S3 "PoolingProtocolCureSupFileS3.zip".
Files
DeMeeûs&NoûsStutteringTestTemplatePCI-Zool4.pdf
Files
(2.4 MB)
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