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Published July 11, 2022 | Version v2.2.0
Software Open

MIT-LCP/mimic-code: MIMIC Code v2.2.0

Creators

  • 1. @mit-lcp
  • 2. MIT
  • 3. WHU
  • 4. Wenzhou Medical University
  • 5. @honestbee @fundMyLife @airasia
  • 6. @MIT-LCP
  • 7. MIT CSAIL
  • 8. HUP
  • 9. National University Of Singapore

Description

This release updates the MIMIC Code repository to align with MIMIC-IV v2.0. It also contains many bug fixes.

Change log:

  • Build MIMIC scripts
    • Updated PostgreSQL build scripts for MIMIC-IV v2.0 (#1328, thanks @alexmbennett2)
    • Added SQLite build of MIMIC-IV (thanks @armando-fandango) and updated for MIMIC-IV v2.0
    • Fixed MySQL build code (thanks @mdsung) and updated for MIMIC-IV v2.0
    • Updated DuckDB code to work with MIMIC-IV v2.0
  • Concept improvements
    • The generation of BigQuery tables by the GitHub action no longer prints rows to the standard output
    • Fixed incompatibility of convert_bigquery_to_postgres.sh on Mac OS X. The script should run on both Mac OS X and Ubuntu now.
    • Fixed imputation of cell counts (#1208, thanks @duanxiangjie)
    • Added an initial concept mapping of labs to LOINC (thanks @a-chahin). This mapping will continue to be improved in this repository.
    • Fixed matching of GCS value with prior value in the last 6 hours (#1248, thanks @prockenschaub)
    • Added mapping tables for standard concepts for waveform data (#1321 and #1322, thanks @a-chahin)

Full Changelog: https://github.com/MIT-LCP/mimic-code/compare/v2.1.1...v2.2.0

Files

MIT-LCP/mimic-code-v2.2.0.zip

Files (7.0 MB)

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Additional details

Related works

Is supplement to
https://github.com/MIT-LCP/mimic-code/tree/v2.2.0 (URL)