Published June 16, 2022 | Version EnhancerAnnotation
Software Open

AdelmanLab/Enhancer-Annotation: CoGENT

Creators

Description

Connecting Genes to Enhancers with Nascent Transcriptomics

Scripts developed by Andrew Field for the purpose of filtering and annotating enhancers peaks generated with dREG.

dREG peaks are filtered by read count, p-value, and peak score with dRIP_filt.R.

CoGENT.R filters peaks are annotated by proximity to genes (promoter proximal, intragenic, or intergenic). Distal peaks (intragenic and intergenic) are then tied to likely target genes.

The dominant transcription start site within each enhancer peak is determined by TSScent.R.

Files

AdelmanLab/Enhancer-Annotation-EnhancerAnnotation.zip

Files (28.1 kB)

Additional details