Published June 16, 2022
| Version EnhancerAnnotation
Software
Open
AdelmanLab/Enhancer-Annotation: CoGENT
Creators
Description
Connecting Genes to Enhancers with Nascent Transcriptomics
Scripts developed by Andrew Field for the purpose of filtering and annotating enhancers peaks generated with dREG.
dREG peaks are filtered by read count, p-value, and peak score with dRIP_filt.R.
CoGENT.R filters peaks are annotated by proximity to genes (promoter proximal, intragenic, or intergenic). Distal peaks (intragenic and intergenic) are then tied to likely target genes.
The dominant transcription start site within each enhancer peak is determined by TSScent.R.
Files
AdelmanLab/Enhancer-Annotation-EnhancerAnnotation.zip
Files
(28.1 kB)
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Additional details
Related works
- Is supplement to
- https://github.com/AdelmanLab/Enhancer-Annotation/tree/EnhancerAnnotation (URL)