Published March 19, 2025
| Version v4
Dataset
Open
Monod supporting data
- 1. Caltech
-
2.
California Institute of Technology
- 3. Harvard Medical School
Contributors
Researchers:
- 1. Caltech
-
2.
California Institute of Technology
Description
The release of the Monod package (https://github.com/pachterlab/monod) is accompanied by the analysis of several 10X and seqFISH+ datasets to identify trends in transcriptional regulation mechanisms and parameters. This data deposit contains the copy-number data as well as the results of the Monod inference pipeline.
monod_examples_loom_files.tar.gz: raw loom files generated by pseudoaligning Desai, Allen, Mayère, Hwang, Lu, Takei, Khateb and 10x datasets.
monod_examples_fit_results.tar.gz: search results and figures from fitting models to the datasets.
monod_examples.zip: a copy of the project repository (https://github.com/pachterlab/monod_examples).
Files
monod_examples.zip
Files
(5.0 GB)
| Name | Size | Download all |
|---|---|---|
|
md5:f8e11c2b14f6172736b088550ca53394
|
232.4 MB | Preview Download |
|
md5:c90fc3bcbafc549ebc4ef650b6203cd8
|
3.4 GB | Download |
|
md5:ea45f78f869480a22cb079858a0dde58
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1.4 GB | Download |
Additional details
Related works
- Continues
- Dataset: 10.22002/D1.2017 (DOI)
- Dataset: 10.22002/D1.2018 (DOI)
- References
- Preprint: 10.1101/2021.07.30.454514 (DOI)
Dates
- Available
-
2025-03-19