marianschmidt/msSPChelpR: msSPChelpR 0.9.1

New Features

• new function histgroup_iarc() to create variable for groups of malignant neoplasms considered to be histologically 'different' for the purpose of defining multiple tumors, ICD-O-3 (see #100)
• some functions gain new quiet argument to suppress rlang::warn() and rlang::inform() messages. You can use this when you have checked your results for correctness and want to reduce message output, but keep the progress bars.
• asir(): add World Standard Population 2000-2025 for function with option std_pop=="WHO2000" as described here: https://seer.cancer.gov/stdpopulations/world.who.html
• sir_byfutime() gains new argument expect_missing_refstrata_df. You can define another dataframe that contains strata expected to be missing from refrates_df (because they are not explicitly coded with incidence = 0). This can be helpful, if refrates_df has a lot of strata and 0 incidence strata have been removed to save storage space. Internally, the rows of expect_missing_refstrata_df will be appended to refrates_df. This reduces the number of lines reported in attribute problems_missing_ref_strata. Default setting is expect_missing_refstrata_df = NULL.
• sample data set for data("us_second_cancer") gains new variable t_hist on histology, i.e. ICD-O-3-Code on tumor morphology (4 digits)

Breaking Changes

• no breaking changes in this version

Bug fixes

• make calc_refrates() more robust for missing race_var (Closes #89)
• fix bug in calc_refrates() using calc_totals == TRUE (Closes #90)
• fix bug in calc_refrates() using numeric versions of fill_sites (Closes #92)
• fix bug in asir() that throws error for variable not needed (Closes #95)

Internal

• replace progress bars by cli
• deprecate verb.()syntax from tidytable (Closes #94)