SOP: Manual Segmentation of Tissue

This document describes the process used by subject matter experts (SMEs) for downloading HuBMAP image data, generating manual segmentations of structures such as functional tissue units (FTUs), and uploading the segmentations to a storage location. The audience for this SOP is the group of subject matter experts (SMEs) who are tasked with segmenting FTUs in image data, typically a histologist recommended by the PI associated with the organ of interest. The current tool preferred for this process is QuPath.