Published June 7, 2022
| Version v.0.9.2
Software
Open
NBISweden/AGAT: AGAT-v0.9.2
Creators
- 1. Alcediag
- 2. Oregon State University
- 3. @VEuPathDB
- 4. European Bioinformatics Institute | EMBL-EBI
Description
- agat_convert_sp_gff2gtf.pl - fix #245 by making CDS identifier uniq using start and stop position on to of ID because they can share a same ID
- agat_sp_extract_sequences.pl - fix #246 : Remove name from header (now use --keep_attributes and the original attribute tag will be use instead ). Add --keep_attributes and --keep_parent_attributes to keep information fromm GFF into the fasta. Update test accordingly.
- New script agat_sq_reverse_complement.pl - fix #248
- add missing dependency LWP::Protocol::https dependency used to catch SO on the fly from URI/URL - fix #260
- update doc
Files
NBISweden/AGAT-v.0.9.2.zip
Files
(24.8 MB)
| Name | Size | Download all |
|---|---|---|
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md5:f5144402882915a21755a0d8fcb076a5
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Additional details
Related works
- Is supplement to
- https://github.com/NBISweden/AGAT/tree/v.0.9.2 (URL)