Published May 31, 2022
| Version 0.8.0
Software
Open
phac-nml/staramr: 0.8.0
Authors/Creators
- 1. Public Health Agency of Canada, University of Manitoba
- 2. Manitoba Public Insurance
- 3. Invenia
- 4. Public Health Agency of Canada
- 5. Canadian Food Inspection Agency
Description
- Fixed issue when using older version of pandas (#136) (0.8.0.dev0).
- Fixed up some Python warnings related to pandas (0.8.0.dev0).
- Adjusted
mlsttests to account for differences in results for newer versions (0.8.0.dev0). - Drop support for Python 3.5 as it leads to issues with managing dependency versions (0.8.0.dev0).
- Switched from disallowing to generating a warning when the PointFinder organism is not one of the validated organisms (0.8.0.dev1).
- Updated ResFinder and PointFinder gene drug key to
072621(0.8.0.dev2). - Updated default database commits to those corresponding to dates used by ResFinder (2022-05-24), PointFinder (2021-02-01), and PlasmidFinder (2021-11-29) (0.8.0.dev2).
- Fixed issue when multiple matches for same amino acid change to try and select the most specific amino acid change (0.8.0.dev2).
- Fixed up PlasmidFinder database handling to account for changes to PlasmidFinder database structure (0.8.0.dev2).
Files
phac-nml/staramr-0.8.0.zip
Files
(1.7 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:511c87a8215bdec7379cd2bf2db40bdf
|
1.7 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/phac-nml/staramr/tree/0.8.0 (URL)