Published May 5, 2022
| Version v1
Software
Open
Software and scripts for "Genetic Polyploid Phasing from Low-Depth Progeny Samples"
Creators
- 1. Algorithmic Bioinformatics, Heinrich Heine University Düsseldorf, Germany
- 2. Institute for Medical Biometry and Bioinformatics, Medical Faculty, Heinrich Heine University Düsseldorf, Germany
- 3. Gennovation B.V., Agro Business Park 10, 6708 PW, Wageningen, The Netherlands; Plant Breeding, Wageningen University & Research, The Netherlands
- 4. Plant Breeding, Wageningen University & Research, The Netherlands
- 5. Forschungszentrum Jülich, Institute of Bio and Geosciences, Bioinformatics (IBG-4), Germany; Bioeconomy Science Center, c/o Forschungszentrum Jülich, Germany; Biological Data Science, Heinrich Heine University Düsseldorf, Germany; Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine University Düsseldorf, Germany
- 6. Algorithmic Bioinformatics, Heinrich Heine University Düsseldorf, Germany; Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine University Düsseldorf, Germany
Description
Used software and scripts for pending iScience submission "Genetic Polyploid Phasing from Low-Depth Progeny Samples".
The software is a frozen copy of a specific commit of https://github.com/whatshap which has not yet been merged into the main branch. Details are given in the readme file.
The scripts have been used to generate the experiments in the publication. This is also a frozen copy a commit from https://github.com/AlBi-HHU/genetic-phasing-scripts.