Published May 4, 2022
| Version v1
Journal article
Open
VCF files from: Optical mapping compendium of structural variants across global cattle breeds
Creators
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Talenti, Andrea1
- Powell, Jessica1
- Wragg, David1
- Chepkwony, Maureen2
- Fisch, Andressa3
- Ferreira, Beatriz3
- Marcadante, Maria4
- Santos, Isabel5
- Ezeasor, Chukwunonso6
- Obishakin, Emmanuel7
- Muhanguzi, Dennis8
- Amanyire, Wilson8
- Silwamba, Isaac9
- Muma, John10
- Mainda, Geoffrey11
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Kelly, Rob12
- Toye, Phil2
- Connelley, Tim1
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Prendergast, James1
- 1. The Roslin Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush Campus, Midlothian, EH25 9RG, United Kingdom
- 2. The International Livestock Research Institute, PO Box 30709, Nairobi, Kenya
- 3. Ribeirão Preto College of Nursing, University of Sao Paulo, Ribeirão Preto, SP, Brazil
- 4. Institute of Animal Science, Agriculture Department of São Paulo Government, Sertãozinho, SP, 14.174-000, Brazil
- 5. Ribeirão Preto School of Medicine, University of São Paulo, Ribeirão Preto, SP, 14049-900, Brazil
- 6. Department of Veterinary Pathology and Microbiology, University of Nigeria, Nsukka. Enugu State, Nigeria
- 7. Biotechnology Division, National Veterinary Research Institute, Vom, Plateau State, Nigeria.
- 8. School of Biosecurity, Biotechnology and Laboratory Sciences (SBLS), College of Veterinary Medicine, Animal Resources and Biosecurity, Makerere University, P.O Box 7062, Kampala, Uganda
- 9. Department of Disease Control, School of Veterinary Medicine, University of Zambia, P.O BOX 32379, Lusaka, Zambia
- 10. Department of Laboratory and Diagnostics, Livestock Services Cooperative Society, P.O. BOX 32025, Lusaka, Zambia
- 11. Department of Veterinary Services, Ministry of Fisheries and Livestock, Central Veterinary Research Institute, P.O. Box 33980, Lusaka, Zambia
- 12. Royal (Dick) School of Veterinary Studies, University of Edinburgh, Roslin, UK
Description
VCF containing the structural variants called using Bionano Solve on the optical mapping data for 18 cattle samples described in Talenti et al.
Files
Files
(5.6 MB)
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md5:fb4125c29a8e9fc148d53c48c5536841
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347.6 kB | Download |
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md5:de2977ab20bf6b646e99748f391ee70b
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346.7 kB | Download |
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md5:01d3e59f9dfd401ed7ab405df8699252
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332.2 kB | Download |
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md5:269f99e42ecfc04fa768c4ebd28379fa
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306.6 kB | Download |
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md5:88689e6d0939fae874ac0203ac49ead2
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308.7 kB | Download |
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md5:4410f8f9d6e9cac0a899882ca345fc42
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319.5 kB | Download |
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md5:0aff2a2b8cf97a3fb0a5c9c079f46877
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379.3 kB | Download |
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md5:47270c138bc91c947050cb3ebec17ac6
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md5:fd2be9c65f60cec5e4b9469abf2c77e6
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md5:f6c8e96fdf2a1648f1cde7bc7587d664
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193.0 kB | Download |
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md5:bb6dbf797aefd8df913459cf217e3b2c
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md5:b0582ed55a9caf83362452df5edf66d0
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md5:b0d063ef77b3b630faeb9f72f82aa32a
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275.0 kB | Download |
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md5:b716fcaa2fe0fce765557639bacab8ec
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238.2 kB | Download |
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md5:dbb6503dddb3da85188c38630ce1fb3c
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418.6 kB | Download |
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md5:3e38ee1690d9f2dcad160151f77510d2
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420.8 kB | Download |
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md5:e9fabc8f9b9c0cb908efbeab0a1a6d0b
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350.6 kB | Download |
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md5:1b70d3d41a4e5c235dbf5537233f6c13
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366.2 kB | Download |
Additional details
Funding
- UK Research and Innovation
- Prediction of genes and regulatory elements in farm animal genomes BBS/E/D/10002070
- UK Research and Innovation
- GCRF-BBR: A compendium of structural variation across African cattle breeds BB/R015155/1