Optimizing differential equations to fit data and predict outcomes: Julia software code

Julia source code associated with article:

Frank, S. A. 2022. Optimizing differential equations to fit data and predict outcomes. arXiv:22 [to be filled in]

Code here is tagged version arXiv-1.0 in https://github.com/evolbio/FitODE git repository. The version here also includes the output from all runs in the associated arXiv article at https://arxiv.org/abs/2204.07833. Those data are not in the GitHub repository.

The main code is on the git branch unifed. A small piece of code to calculate the loss values of the predicted trajectories for the test period [60,90] in Figure 4 is on the branch predict_loss. The branch predict_loss is only available on GitHub.

The GitHub repository is at https://github.com/evolbio/FitODE.