PartSeg - segmentation and reconstruction tool for 3D microscopy images

• Fix "Show selected" rendering mode in PartSeg ROI Mask (#565)
• Add access by operator [] to pydantic.BaseModel base structures for keeping backward compatibility (#579)

• Allow setting zoom factor from the interface in Search Label napari plugin (#538)
• Add controlling of zoom factor of search ROI in main GUI (#540)
• Better serialization mechanism allow for declaration data structure migration locally (#462)
• Make `*.obsep" file possible to load in PartSeg Analysis (#564)
• Add option to extract measurement profile or ROI extraction profile from the batch plan (#568)
• Allow import calculation plan from batch result excel file (#567)
• Improve error reporting when failing to deserialize data (#574)
• Launch PartSeg GUI from napari #581

• Store PartSegImage.Image channels as separated arrays (#554)
• Remove deprecated modules. (#429)
• Switch serialization backend to nme (#569)

• Add test of creating AboutDialog (#539)
• Setup test for python 3.10. Disable class_generator test for this python (#570)

• 03f60b443d389488125538ec68b522d70d941518 doc: Update changelog and add new badges to readme (#580)
• 3d6f9b127dbd81e0e1eaa885a7ae289a558d5710 [pre-commit.ci] pre-commit autoupdate (#572)
• 0f31f0656fd34af05d9010931b1b4a0f2d870551 feat: Launch PartSeg GUI from napari (#581)
• e31d28d0927b5f42eaecc0b7f2968bc872b9d429 bugfix: Add access by operator [] to pydantic.BaseModel base structures for keep backward compatybility (#579)
• c0db122a4b9d463677b67b9ac37d71afeb92e9bc feat: Improve error reporting when fail to deserialize data (#574)
• 607e4d2401eabce02f2cc8a1cf96e64a81a85166 Limit simpleitk versions (#577)
• 22b207fcd92be7ab45cb2baed5d330d49a528538 test: Setup test for python 3.10. Disable class_generator test for this python (#570)
• 908d9ba16ccc33bf817c6131e230d18f5deb298e refactor: Switch serialization backen to nme (#569)
• 97e32b276275846a08abe0996a7868362f3cb771 feat: Allow import calculation plan from batch result excel file (#567)

• 22bbdec75eea056be869a44f2b4f9e46e813fba3 remove obsolete console_script <details><summary><b>See More</b></summary>

• 12162196013e27b09f4ee78a71c90364d0a7c76f feat: Add option to extract meaurement profile or roi extraction profile from batch plan (#568)

• 507beca1f87bf2b6d42a0a6bcfd47a94ad982aae build(deps): bump sentry-sdk from 1.5.7 to 1.5.8 in /requirements (#557)
• 7633038c068b7b557047b1f3d3e9e54a67bb4d2e feat: Make `*.obsep" file possible to load in PartSeg Analysis (#564)
• 5b9576c5c3f352ac949b5e6c834119b3c294e2e6 fix: Fix "Show selected" rendering mode in PartSeg ROI Mask (#565)
• 03136d60e1ba8468d3f2bf0b29fb2e891573fbd0 Clean azure pipelines configuration (#566)
• 743d9845ac502483afed0e34a22d2332b195fd21 [pre-commit.ci] pre-commit autoupdate (#558)
• 4979a6d3c3944e82ed6b276edb9a805ac7d55ec6 Remove commented out code (#563)
• 56fd22d721bf2297f7bea69e4c2b5497bd358b2d refactor: Remove deprecated modules. (#429)
• ec50e86402316fc25dc7703b41c587d8bf2650af build(deps): bump sympy from 1.10 to 1.10.1 in /requirements (#556)
• b08e0bdb2a198738b79d14931a4969a6c2a19f03 feat: Better serialization mechanism allow for declaration data structure migration locally (#462)
• fc651edabac2c0f1b0e42e7155ec27861deac89f build(deps): bump tifffile from 2022.2.9 to 2022.3.25 in /requirements (#562)
• a99582ecce96f737d744249a60c134d983eda160 build(deps): bump sphinx from 4.4.0 to 4.5.0 in /requirements (#561)
• f687b822d54cc6fb0167ff093e71cacf3adea53d refactor: store PartSegImage.Image channels as separated arrays (#554)
• df7c54dfb057c1226dfac3e2f48a45ffbf18da13 [pre-commit.ci] pre-commit autoupdate (#552)
• 5e2a7b8abb11c28794b013c7f59124734f9167da Bump bundle requirements (#548)
• 2440e1b1bc32a30d2f34e009c9b0dfc70306bc51 build(deps): bump pillow from 9.0.0 to 9.0.1 in /requirements (#549)
• 0e8fc0f295ffafb234b380989a5109c744b507da build(deps): bump pyinstaller from 4.8 to 4.10 in /requirements (#545)
• 33dac4f53c34540389f0f2a263d9ca200b7fcebd Add test workflow to find deprecations in napari main repository (#542)
• 099b03fbbdd1e081fccb3c5f0bc2f0bf4a8d82d3 feat: Add controling of zoom factor of search ROI in main GUI (#540)
• b81fb098303bb5ac5f8722e55db3f8b6e153aed4 test: Add test of creating AboutDialog (#539)
• b0f29adee243ba94b1a406c5cf7f118f0aae2cd3 feat: Allow to set zoom factor from interface in Search Label napari plugin (#538)
• 79869cf79c2bd39cc40528d10f59f7ce64c24382 prepare test for napari 0.4.14 (#517)
• 31e0127b6fb8fe11acc904f1f501b4b9dfff1b53 Apply non esentail parts of better serialization PR #462 (#533)
• dd95a475b19a8e4c8181752228946072d93e86ef Fix deprecations (#531)
• d1a64ee1733e7a5f354a83babec4e25cf8e1d43f build(deps): bump sentry-sdk from 1.5.3 to 1.5.4 in /requirements (#515)
• ca96437615ddb320c2e7c27c77f7d937ca56d785 build(deps): bump qtpy from 2.0.0 to 2.0.1 in /requirements (#522)
• ecedd9673235e9fe6e706bc3e5546b15b044db22 build(deps): bump tifffile from 2021.11.2 to 2022.2.2 in /requirements (#523)
• 3daf45d31c3802a02e5f0aff5926d29a52e08420 build(deps): bump numpy from 1.22.1 to 1.22.2 in /requirements (#524)
• 979d6f6bb68e1356f6c48e81fc36d535368df947 build(deps): bump oiffile from 2021.6.6 to 2022.2.2 in /requirements (#521)
• f47576be8e8919806b10b382583a2a2d4b24d2c5 [pre-commit.ci] pre-commit autoupdate (#520)
• 4fe701b6d3636ee7efd510d9704c1786159e2ab9 Not use GabrielBB/xvfb-action on non linux systems (#519)
• d7dfdbb36d4fc500db790c16effde2eddf21e903 build(deps): bump pandas from 1.3.5 to 1.4.0 in /requirements (#514)
• 5ad4483f43d69d3c48c582200a2bf470b0f43eba build(deps): bump ipython from 8.0.0 to 8.0.1 in /requirements (#513)
• cf69bc0f03b6870580a7641ecfe77562b6c874e3 build(deps): bump sentry-sdk from 1.5.2 to 1.5.3 in /requirements (#512)

This list of changes was auto generated.</details>