Published March 14, 2022 | Version v1
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Data files for Hill et al. 2022 'Lifestyle transitions in fusarioid fungi are frequent and lack clear genomic signatures' doi:10.1093/molbev/msac085

Creators

  • 1. RBG, Kew and Queen Mary University of London
  • 2. Plant Resources Center, Vietnam Academy of Agricultural Sciences
  • 3. RBG, Kew

Description

Data files for Hill et al. (2022) Lifestyle transitions in fusarioid fungi are frequent and lack clear genomic signatures. Mol. Biol. Evol. 39(4):msac085. See the associated GitHub repostiory for analysis scripts.

Description of contents:

CSEP_CAZyme_aa_sequences - FASTA files containing amino acid sequences of candidate secreted effector proteins (CSEPs) and carbohydrate-active enzymes (CAZymes) for 62 fusarioid taxa included in analyses.

phylogenetic_trees - raw gene and species tree files for all phylogenetic methods used.

orthofinder_run - output files produced by OrthoFinder for the 62 taxa.

orthogroup_data - abundance matrices and CSEP/CAZyme annotation results for orthogroups; ingroup0 includes all 62 taxa, ingroup1 excludes the outgroup taxon (Ilysp1).

Notes

This work was supported by the Evolution and Education Trust (EET) and Pragnell Fund to Ester Gaya. Rowena Hill is a Natural Environment Research Council funded PhD student with the London NERC DTP (NERC Ref: NE/L002485/1).

Files

supplementary_files.zip

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Related works

Is supplement to
Journal article: 10.1093/molbev/msac085 (DOI)