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A new species of tree hyrax (Procaviidae: Dendrohyrax) from West Africa and the significance of the Niger-Volta interfluvium in mammalian biogeography

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Oates, John F, Woodman, Neal, Gaubert, Philippe, Sargis, Eric J, Wiafe, Edward D, Lecompte, Emilie, Dowsett-Lemaire, Françoise, Dowsett, Robert J, Gonedelé Bi, Sery, Ikemeh, Rachel A, Djagoun, Chabi A M S, Tomsett, Louise, Bearder, Simon K (2022): A new species of tree hyrax (Procaviidae: Dendrohyrax) from West Africa and the significance of the Niger-Volta interfluvium in mammalian biogeography. Zoological Journal of the Linnean Society 194 (2): 527-552, DOI: 10.1093/zoolinnean/zlab029, URL: https://academic.oup.com/zoolinnean/article/194/2/527/6299316

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  • Anadu PA, Elamah PO, Oates JF. 1988. The bushmeat trade in southwestern Nigeria: a case study. Human Ecology 16: 199-208.
  • Baker RJ, Bradley RD. 2006. Speciation in mammals and the genetic species concept. Journal of Mammalogy 87: 643-662.
  • Bauer AM, Tchibozo S, Pauwels OSG, Lenglet G. 2006. A review of gekkotan lizards of Benin, with the description of a new species of Hemidactylus (Squamata: Gekkonidae). Zootaxa 1242: 1-20.
  • Bearder SK, Honess PE, Ambose L. 1995. Species diversity among galagos with special reference to mate recognition. In: Alterman L, Doyle GA, Izard MK, eds. Creatures of the dark: the nocturnal prosimians. Boston: Springer, 331-352.
  • Bearder SK, Oates JF, Dowsett-Lemaire F, Dowsett R. 2015. Evidence of an undescribed form of tree hyrax in the forests of western Nigeria and the Dahomey Gap. Afrotherian Conservation 11: 2-5.
  • Bloomer P. 2013. Genus Dendrohyrax - Tree hyraxes. In: Kingdon J, Happold D, Hoffmann M, Butynski T, Happold M, Kalina J, eds. Mammals of Africa (Volume 1): introductory chapters and Afrotheria. London: Bloomsbury, 152.
  • Booth AH. 1958a. The zoogeography of West African primates: a review. Bulletin de l'Institut Francais de l'Afrique Noire (A) 20: 587-622.
  • Booth AH. 1958b. The Niger, the Volta, and the Dahomey Gap as geographic barriers. Evolution 12: 48-62.
  • Bothma JDuP. 1971. Order Hyracoidea. In: Meester J, Setzer HW, eds. The mammals of Africa: an identification manual. Washington: Smithsonian Institution, part 12.
  • Bouckaert R, Drummond A. 2017. bModelTest: Bayesian phylogenetic site model averaging and model comparison. BMC Evolutionary Biology 17: 42.
  • Bouckaert R, Vaughan TG, Barido-Sottani J, Duchene S, Fourment M, Gavryushkina A, Heled J, Jones G, Kuhnert D, De Maio N, Matschiner M, Mendes FK, Muller NF, Ogilvie HA, du Plessis L, Popinga A, Rambaut A, Rasmussen D, Siveroni I, Suchard MA,Wu CH, Xie D, Zhang C, Stadler T, Drummond AJ. 2019. BEAST 2.5: an advanced software platform for Bayesian evolutionary analysis. PLoS Computational Biology 15: e1006650.
  • Bradley RD, Baker RJ. 2001. A test of the genetic species concept: cytochrome- b sequences and mammals. Journal of Mammalogy 82: 960-973.
  • Coissac E, Hollingsworth PM, Lavergne S, Taberlet P. 2016. From barcodes to genomes: extending the concept of DNA barcoding. Molecular Ecology 25: 1423-1428.
  • Colyn M, Hulselmans J, Sonet G, Oude P, De Winter J, Natta A, Nagy ZT, Verheyen E. 2010. Discovery of a new duiker species (Bovidae: Cephalophinae) from the Dahomey Gap, West Africa. Zootaxa 2637: 1-30.
  • Damasceno R, Strangas ML, Carnaval AC, Rodrigues MT, Moritz C. 2014. Revisiting the vanishing refuge model of diversification. Frontiers in Genetics 5: 353.
  • Djagoun CAMS, Akpona HA, Mensah GA, Nuttman C, Sinsin B. 2013. Wild mammals trade for zootherapeutic and mythic purposes in Benin (West Africa): capitalizing species involved, provision sources, and implications for conservation. In: Alves RRN, Rosa IL, eds. Animals in traditional folk medicine. Berlin: Springer, 367-381.
  • Djossa BA, Zachee P, Sinsin BA. 2012. Activity patterns and habitat use of the western tree hyrax (Dendrohyrax dorsalis) within forest patches and implications for conservation. Ecotropica 18: 65-72.
  • Dowsett-Lemaire F, Dowsett RJ. 2011a. Ornithological surveys in Kalakpa Resource Reserve (2005, 2008-2011), with notes on vegetation and mammals. Dowsett-Lemaire Miscellaneous Report 76: 1-33.
  • Dowsett-Lemaire F, Dowsett RJ. 2011b. The forests of eastern Ghana, with special reference to birds and conservation status. A report prepared for the Wildlife Division, Forestry Commission, Ghana. Dowsett-Lemaire Miscellaneous Report 77: 1-16.
  • Dowsett-Lemaire F, Dowsett RJ. 2011c. Ornithological expedition to Togo 2010 -2011. Dowsett-Lemaire Miscellaneous Report 78: 1-35.
  • Dowsett-Lemaire F, Dowsett RJ. 2014. The birds of Ghana: an atlas and handbook. Liege: Tauraco Press.
  • Dowsett-Lemaire F, Dowsett RJ. 2019. The birds of Benin and Togo. Sumene: Tauraco Press.
  • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792-1797.
  • FAO. 2015. Global forest resources assessment 2015. Desk reference. Rome: Food and Agriculture Organization of the United Nations.
  • Foster JB. 1964. Evolution of mammals on islands. Nature 202: 234-235.
  • Galimberti A, Sandionigi A, Bruno A, Bellati A, Casiraghi M. 2015. DNA barcoding in mammals: what's new and where next? Hystrix 26: 13-24.
  • Gaubert P, Njiokou F, Ngua G, Afiademanyo K, Dufour S, Melekani J, Gonedele Bi S, Tougard C, Olayemi A, Danquah E, Djagoun CAMS, Kaleme P, Mololo CN, Stanley W, Luo S-J, Antunes A. 2016. Phylogeography of the heavily poached African common pangolin (Pholidota, Manis tricuspis) reveals six cryptic lineages as traceable signatures of Pleistocene diversification. Molecular Ecology 25: 5975-5993.
  • Gaubert P, Njiokou F, Olayemi A, Pagani P, Dufour S, Danquah E, Nutsuakor MEK, Ngua G, Missoup A-D, Tedesco PA, Dernat R, Antunes A. 2015. Bushmeat genetics: setting up a reference framework for the DNA-typing of African forest bushmeat. Molecular Ecology Resources 15: 633-651.
  • Gaubert P, Zenatello M. 2009. Ancient DNA perspective on the failed introduction of mongooses in Italy during the XXth century. Journal of Zoology 279: 262-269.
  • Gray JE. 1868. Revision of the species of Hyrax, founded on the specimens in the British Museum. Annals and Magazine of Natural History 1: 35-51.
  • Groves CP. 2007. The taxonomic diversity of the Colobinae in Africa. Journal of Anthropological Sciences 85: 7-34.
  • Grubb PJ. 1978. The potto (Perodicticus potto: Primates, Lorisidae) in Nigeria and adjacent territories. Bulletin de l'Institut Francais de l'Afrique Noire (A) 40: 909-913.
  • Grubb PJ. 1990. Primate geography in the Afro-tropical forest biome. In: Peters G, Hutterer R, eds. Vertebrates in the tropics. Bonn: Museum Alexander Koenig, 187-214.
  • Grubb PJ. 2001. Endemism in African rain forest mammals. In: Weber W, White LJT, Vedder A, Naughton-Treves L, eds. African rain forest ecology and conservation. New Haven: Yale University Press, 88-100.
  • Grubb PJ, Jones TS, Davies AG, Edberg E, Starin ED, Hill JE. 1998. Mammals of Ghana, Sierra Leone and The Gambia. Zennor: Trendrine Press.
  • Grubb PJ, Powell CB. 1999. Discovery of red colobus monkeys (Procolobus badius) in the Niger Delta with the description of a new and geographically isolated subspecies. Journal of Zoology, London 248: 67-73.
  • Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
  • Hammer O, Harper DAT, Ryan PD. 2001. PAST: paleontological statistics software package for education and data analysis. Palaeontologia Electronica 4: 1-9. http:// palaeo-electronica.org/2001_1/past/issue1_01.htm
  • Happold DCD. 1987. The mammals of Nigeria. Oxford: Clarendon Press.
  • Happold DCD. 1996. Mammals of the Guinea-Congo rain forest. Proceedings of the Royal Society of Edinburgh 104B: 243-284.
  • Hatt RT. 1936. The hyraxes collected by the American Museum Congo Expedition. Bulletin of the American Museum of Natural History 72: 117-141.
  • Hawthorne WD, Abu-Juam M. 1995. Forest protection in Ghana. Gland: IUCN.
  • Hoeck H. 2011. Family Procaviidae (hyraxes). In: Wilson DE, Mittermeier RA, eds. Handbook of the mammals of the world, Vol. 2. Barcelona: Lynx Edicions, 28-47.
  • Ikemeh RA. 2013. Population survey of Nigerian-Cameroon chimpanzees (Pan troglodytes ellioti) in southwestern Nigerian priority sites: Idanre forest cluster and Ise Forest Reserve. African Primates 8: 39-50.
  • Ikemeh R, Oates JF, Inaoyom I. 2019. Piliocolobus epieni. The IUCN Red List of Threatened Species 2019: e. T41024A92656391. Available at: https://dx.doi.org/10.2305/ IUCN.UK.2019-3.RLTS.T41024A92656391.en. Downloaded on 27 September 2020.
  • Jentink FA. 1886. On a new species of hyrax (Hyrax stampflii) from Liberia. Notes from the Leyden Museum 8: 209-212.
  • Jones C. 1978. Dendrohyrax dorsalis. Mammalian Species 113: 1-4.
  • Kapli P, Lutteropp S, Zhang J, Kobert K, Pavlidis P, Stamatakis A, Flouri T. 2017. Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo. Bioinformatics 33: 1630-1638.
  • Kimura M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16: 111-120.
  • Kingdon J. 1971. East African mammals: an atlas of evolution in Africa, Vol. 1. London: Academic Press.
  • Kingdon J. 1990. Island Africa: the evolution of Africa's rare animals and plants. London: Collins.
  • Kingdon J. 1997. The Kingdon field guide to African mammals. San Diego: Academic Press.
  • Koren L, Geffen E. 2009. Complex call in male rock hyrax (Procavia capensis): a multi-information distributing channel. Behavioral Ecology and Sociobiology 63: 581-590.
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution 35: 1547-1549.
  • Luiselli L, Hema EM, Segniagbeto GH, Ouattara V, Eniang EA, Parfait G, Akani GC, Sirima D, Fakae BB, Dendi D, Fa JE. 2020. Bushmeat consumption in large urban centres in West Africa. Oryx 54: 731-734.
  • Maisels F, Oates JF, Linder J, Ikemeh R, Imong I, Etiendem D. 2019. Cercocebus torquatus (errata version published in 2019). The IUCN Red List of Threatened Species 2019: e.T4201A154210757. Available at: https://dx.doi. org/10.2305/IUCN.UK.2019-1.RLTS.T4201A154210757.en. Downloaded on 27 September 2020.
  • Maley J. 1996. The African rain forest - main characteristics of changes in vegetation and climate from the Upper Cretaceous to the Quaternary. Proceedings of the Royal Society of Edinburgh 104B: 31-73.
  • Maley J. 2001. The impact of arid phases on the African rain forest through geological history. In: Weber W, White LJT, Vedder A, Naughton-Treves L, eds. African rain forest ecology and conservation. New Haven: Yale University Press, 68-87.
  • Marin J, Donnellan SC, Hedges SB, Puillandre N, Aplin KP, Doughty P, Hutchinson MN, Couloux A, Vidal N. 2013. Hidden species diversity of Australian burrowing snakes (Ramphotyphlops). Biological Journal of the Linnean Society 110: 427-441.
  • Marshall JT, Marshall ER. 1976. Gibbons and their territorial songs. Science 193: 235-237.
  • Mason JL, Oates JF. 1977. Blue mountains of the Moon. Geographical Magazine 49: 648-653.
  • Matsuda Goodwin R , Oates JF , Nobime G , Segniagbeto GH, Ikemeh R, Mittermeier RA. 2020. Cercopithecus erythrogaster. The IUCN Red List of Threatened Species 2020: e.T4217A17946182. Available at: https://dx.doi.org/10.2305/IUCN.UK.2020-2.RLTS. T4217A17946182.en. Downloaded on 27 September 2020.
  • Milner JM, Gaylard A. 2013. Dendrohyrax arboreus - southern tree hyrax (southern tree dassie). In: Kingdon J, Happold D, Hoffmann M, Butynski T, Happold M, Kalina J, eds. Mammals of Africa (Volume 1): introductory chapters and Afrotheria. London: Bloomsbury, 152-155.
  • Milner JM, Harris S. 1999. Activity patterns and feeding behaviour of the tree hyrax, Dendrohyrax arboreus, in the Parc National des Volcans, Rwanda. African Journal of Ecology 37: 267-280.
  • Nicolas V, Akpatou B, Wendelen W, Peterhans JK, Olayemi A, Decher J, Missoup A-D, Denya C, Barriere P, Craud C, Colyn M. 2010a. Molecular and morphometric variation in two sibling species of the genus Praomys (Rodentia: Muridae): implications for biogeography. Zoological Journal of the Linnean Society 160: 397-419.
  • Nicolas V, Olayemi A, Wendelen W, Colyn M. 2010b. Mitochondrial DNA and morphometrical identification of a new species of Hylomyscus (Rodentia: Muridae) from West Africa. Zootaxa 2579: 30-44.
  • Oates JF. 1988. The distribution of Cercopithecus monkeys in West African forests. In: Gautier-Hion A, Bourliere F, Gautier J-P, Kingdon J, eds. A primate radiation: evolutionary biology of the African guenons. Cambridge: Cambridge University Press, 79-103.
  • Oates JF. 2011. Primates of West Africa: a field guide and natural history. Arlington: Conservation International.
  • Oates JF, Ikemeh R, Nobime G, Svensson M. 2020. Perodicticus potto ssp. juju. The IUCN Red List of Threatened Species 2020: e.T91995465A91995471. Available at: https://dx.doi.org/10.2305/IUCN.UK.2020-2.RLTS. T91995465A91995471.en. Downloaded on 6 November 2020.
  • Oates JF, Jewell PA. 1967. Westerly extent of the range of three African lorisoid primates. Nature 215: 778-779.
  • Oates JF, Trocco T. 1983. Taxonomy and phylogeny of blackand-white colobus monkeys: inferences from an analysis of loud-call variation. Folia Primatologica 40: 83-113.
  • Olayemi A, Oyeyiola A, Antunes A, Bonillo C, Cruaud C, Gaubert, P. 2011. Contribution of DNA-typing to bushmeat surveys: assessment of a roadside market in south-western Nigeria. Wildlife Research 38: 696-716.
  • Poorter L, Bongers F, Lemmens RHMJ. 2004. West African forests: introduction. In: Poorter L, Bongers F, Kouame FN', Hawthorne WD, eds. Biodiversity of West African forests: an ecological atlas of woody plant species. Wallingford: CABI, 5-14.
  • Puillandre N, Lambert A, Brouillet S, Achaz G. 2012. ABGD, automatic barcode gap discovery for primary species delimitation. Molecular Ecology 21: 1864-1877.
  • Rahm U. 1969. Notes sur le cri du Dendrohyrax dorsalis (Hyracoidea). Mammalia 33: 68-79.
  • Rambaut A. 2018. FigTree: tree figure drawing tool. Version 1.4.4. Edinburgh: Institute of Evolutionary Biology, University of Edinburgh.
  • Rambaut A, Drummond AJ. 2020. TreeAnnotator v.2.6.2. Edinburgh: Institute of Evolutionary Biology, University of Edinburgh.
  • Rambaut A, Drummond AJ, Xie D, Baele G, Suchard MA. 2018. Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Systematic Biology 67: 901-904.
  • Richard PB. 1964. Notes sur la biologie du daman des arbres. Biologia Gabonica 1: 73-84.
  • Robbins CB. 1978. The Dahomey Gap - a revaluation of its significance as a faunal barrier to West African high forest mammals. Bulletin of the Carnegie Museum of Natural History 6: 168-174.
  • Roberts D. 1999. A preliminary investigation of the taxonomic implications of the loud calls of Dendrohyrax (Hyracoidea, Procavia) in Africa. Unpublished Undergraduate Thesis, Oxford Brookes University.
  • Roberts D. 2001. Geographic variation in the loudcalls of tree hyrax - Dendrohyrax validus (True 1890) - in the Eastern Arc Mountains, East Africa: taxonomic and conservation implications. Unpublished MSc Thesis, University of Reading.
  • Roberts D, Topp-Jorgensen E, Moyer D. 2013. Dendrohyrax validus - eastern tree hyrax. In: Kingdon J, Happold D, Hoffmann M, Butynski T, Happold M, Kalina J, eds. Mammals of Africa (Volume 1): introductory chapters and Afrotheria. London: Bloomsbury, 158-161.
  • Rosevear DR. 1939. The hoofed mammals of Nigeria: III. Procaviidae. Nigerian Field 8: 136-138.
  • Rosevear DR. 1953. Checklist and atlas of Nigerian mammals. Lagos: Government Printer.
  • Rosti H, Pihlstrom H, Bearder S, Pellikka P, Rikkinen J. 2020. Vocalization analyses of nocturnal arboreal mammals of the Taita Hills, Kenya. Diversity 12: 473.
  • Rozas J, Ferrer-Mata A, Sanchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, Sanchez-Gracia A. 2017. DnaSP 6: DNA sequence polymorphism analysis of large data sets. Molecular Biology and Evolution 34: 3299-3302.
  • Salzmann U, Hoelzmann P. 2005. The Dahomey Gap: an abrupt climatically induced rain forest fragmentation in West Africa during the late Holocene. The Holocene 15: 190-199.
  • Sargis EJ, Campbell KK, Olson LE. 2014. Taxonomic boundaries and craniometric variation in the treeshrews
  • Shoshani J. 2005. Order Hyracoidea. In: Wilson DE, Reeder DM, eds. Mammal species of the World: a taxonomic and geographic reference, 3rd edn. Baltimore: Johns Hopkins University Press, 87-89.
  • Shoshani J, Bloomer P, Seiffert ER. 2013. Family Procaviidae, Hyraxes. In: Kingdon J, Happold D, Hoffmann M, Butynski T, Happold M, Kalina J, eds. Mammals of Africa (Volume 1): introductory chapters and Afrotheria. London: Bloomsbury, 150-151.
  • Shultz S, Roberts D. 2013. Dendrohyrax dorsalis: western tree hyrax. In: Kingdon J, Happold D, Hoffmann M, Butynski T, Happold M, Kalina J, eds. Mammals of Africa (Volume 1): introductory chapters and Afrotheria. London: Bloomsbury, 155-157.
  • Stadler T. 2010. Sampling-through-time in birth-death trees. Journal of Theoretical Biology 267: 396-404.
  • Struhsaker TT. 2010. The red colobus monkeys: variation in demography, behavior, and ecology of endangered species. Oxford: Oxford University Press.
  • Ting N. 2008. Molecular systematics of red colobus monkeys (Procolobus [Piliocolobus]): Understanding the evolution of an endangered primate. Unpublished PhD Thesis, City University of New York.
  • Zhang J, Kapli P, Pavlidis P, Stamatakis A. 2013. A general species delimitation method with applications to phylogenetic placements. Bioinformatics 29: 2869-2876.