EukRibo: a manually curated eukaryotic 18S rDNA reference database

EukRibo is a manually curated database of reference small-subunit ribosomal RNA gene (18S rDNA) sequences of eukaryotes, specifically aimed at taxonomic annotation of high-throughput metabarcoding datasets. Unlike other reference databases of ribosomal genes, it is not meant to exhaustively capture all publicly available 18S rDNA sequences from the INSDC repositories, but to represent a subset of highly trustable sequences covering the whole known diversity of eukaryotes, with a focus on protists, manually verified taxonomic identifications, and relatively low genetic redundancy.

EukRibo is part of a suite of public resources generated by the UniEuk project (www.unieuk.org), which are all designed to follow a common taxonomic framework for maximal interoperability. The high level of taxonomic accuracy of EukRibo, together with a newly designed, phylogenetically-informed annotation approach, allow high confidence in the taxonomic annotation of environmental metabarcodes, as well as identification of new eukaryotic diversity at various taxonomic levels using a connected components approach.