Published February 23, 2022 | Version v1
Dataset Open

Transcriptomics processed data outputs for Sofen et al 2022

Creators

  • 1. The University of Tennessee

Description

Processed data ouputs for transcripomtics analysis of Southern Ocean Time Series eukaryotic microbial communities. Files include: protein and HMM database used for iron stress biomarker screening, Proteins that hit to the HMM database curated to search the metatranscriptomic dataset for iron stress biomarker proteins with protein ID's, taxonomic annotation (EUKulele, MMTESP) and calculated transcripts per million (TPM) values, DNA-directed RNA Polymerase (RPB1) proteins used for taxonomic charecterization of the surface eukaryotic community with protein ID's, taxonomic annotation (EUKulele, MMTESP) and calculated transcripts per million (TPM) values.

Files

Files (2.1 MB)

Name Size Download all
md5:cda96bbbdadf3f92a05be6875581b96a
1.3 MB Download
md5:fd987900d32d73bb007f1d5f40cc71f7
6.8 kB Download
md5:2d9fa9a44fceb40adc566d1a03ca886b
186.1 kB Download
md5:3e1dab0bbbc8a4ba236d8a9976c8d81f
513.7 kB Download
md5:041d428fb451d3c7b5fd1ba5b4bfec58
21.0 kB Download
md5:4c965b1047f7737cf0b0b2d0514e922e
45.4 kB Download