Biodiversity Literature Repository

Submit to community
Liberated Data
Published January 1, 2019 | Version v1
Journal article Restricted

Arenibacillus arenosus gen. nov., sp. nov., a member of the family Rhodobacteraceae isolated from sea sand

Authors/Creators

Description

Kim, Jong-Hwa, Kanjanasuntree, Rungravee, Kim, Dae-Hoon, Lee, Jung-Sook, Sukhoom, Ampaitip, Kantachote, Duangporn, Kim, Wonyong (2019): Arenibacillus arenosus gen. nov., sp. nov., a member of the family Rhodobacteraceae isolated from sea sand. International Journal of Systematic and Evolutionary Microbiology 69 (1): 153-158, DOI: 10.1099/ijsem.0.003121, URL: http://dx.doi.org/10.1099/ijsem.0.003121

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Identifiers

URL
https://www.checklistbank.org/dataset/20675
LSID
urn:lsid:plazi.org:pub:5F0B382D590FFFF2FFD4FFA1FFEEFFEF
URL
http://publication.plazi.org/id/5F0B382D590FFFF2FFD4FFA1FFEEFFEF

Has part
Taxonomic treatment: 10.5281/zenodo.6309509 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/A3324055590BFFF6FFADFD49FF35FB61 (URL)
Taxonomic treatment: 10.5281/zenodo.6309511 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/A3324055590BFFF6FFADFB1DFB8AFD28 (URL)
Figure: 10.5281/zenodo.6048612 (DOI)
Dataset: http://table.plazi.org/id/7FE4A1CB590DFFF0FFADFF17FDC3FE60 (URL)
Dataset: http://table.plazi.org/id/7FE4A1CB590CFFF1FCEFFC60FAABFB8B (URL)
Is source of
Dataset: https://www.gbif.org/dataset/ce8b8745-205c-4fdb-9f48-11de4033940f (URL)

References

  • 1. Garrity GM, Bell JA, Lilburn T. Order VIII. Oceanospirillales ord. nov. In: Brenner DJ, Krieg NR, Staley JT and Garrity GM (editors). Bergey' s Manual of Systematic Bacteriology, 2nd ed, vol. 2: (The Proteobacteria), part B (The Gammaproteobacteria). New York: Springer; 2005. pp. 270.
  • 2. Simon M, Scheuner C, Meier-Kolthoff JP, Brinkhoff T, Wagner-Dobler I et al. Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats. Isme J 2017;11:1483-1499.
  • 3. Rosenberg E, Delong EF, Lory S, Stackebrandt E, Thompson F et al. The Prokaryotes, Alphaproteobacteria and Betaproteobacteria, 4th ed. Berlin: Springer-Verlag; 2014.
  • 4. Yu Y, Yan SL, Li HR, Zhang XH. Roseicitreum antarcticum gen. nov., sp. nov., an aerobic bacteriochlorophyll a-containing alphaproteobacterium isolated from Antarctic sandy intertidal sediment. Int J Syst Evol Microbiol 2011;61:2173-2179.
  • 5. Hansen TA, Imhoff JF. Rhodobacter veldkampii, a new species of phototrophic purple nonsulfur bacteria. Int J Syst Bacteriol 1985; 35:115-116.
  • 6. Gordon RE, Mihm JM. Identification of Nocardia caviae (Erikson) nov. comb.*. Ann N Y Acad Sci 1962;98:628-636.
  • 7. Lane D. 16S/23S rRNA sequencing. In: Nucleic acid techniques in bacterial systematics; 1991.
  • 8. Yoon SH, Ha SM, Kwon S, Lim J, Kim Y et al. Introducing EzBio-Cloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613-1617.
  • 9. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA et al. Clustal W and Clustal X version 2.0. Bioinformatics 2007;23: 2947-2948.
  • 10. Felsenstein J. PHYLIP-phylogeny inference package (Version 3.2). Cladistics 1989;5:164-166.
  • 11. Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 2016;33:1870-1874.
  • 12. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985;39:783-791.
  • 13. Tamaoka J, Komagata K. Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 1984;25:125-128.
  • 14. Labrenz M, Collins MD, Lawson PA, Tindall BJ, Schumann P et al. Roseovarius tolerans gen. nov., sp. nov., a budding bacterium with variable bacteriochlorophyll a production from hypersaline Ekho Lake. Int J Syst Bacteriol 1999;49:137-147.
  • 15. Bowman JP. Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae,and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov.Int J Syst Evol Microbiol 2000;50:1861-1868.
  • 16. Cappuccino J, Sherman N. Microbiology: a Laboratory Manual, 6th ed. San Francisco: Benjamin Cummings Pearson Education; 2002.
  • 17. Wang B, Tan T, Shao Z. Roseovarius pacificus sp. nov., isolated from deep-sea sediment.Int J Syst Evol Microbiol 2009;59:1116-1121.
  • 18. Lanyi B. Classical and rapid identification methods for medically important bacteria. Method Microbiol 1987;19:1-67.
  • 19. Smibert R. Phenotypic characterization. In: Methods for general and molecular bacteriology; 1994.
  • 20. Minnikin DE, Hutchinson IG, Caldicott AB, Goodfellow M. Thinlayer chromatography of methanolysates of mycolic acid-containing bacteria. J Chromatogr A 1980;188:221-233.
  • 21. Minnikin DE, O 'Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984;2: 233-241.
  • 22. Komagata K, Suzuki K-I. Lipid and cell-wall analysis in bacterial systematics. Method Microbiol 1988;19:161-207.
  • 23. Venkata Ramana V, Sasikala C, Ramana C. Rhodobacter maris sp. nov., a phototrophic alphaproteobacterium isolated from a marine habitat of India. Int J Syst Evol Microbiol 2008;58:1719- 1722.