Colon mucosa single-cell IMC dataset
Creators
- 1. The Alan Turing Institute; The Francis Crick Institute
- 2. Cancer Systems Biology Laboratory, Francis Crick Institute; School of Cancer and Pharmaceutical Sciences, King's College London
- 3. School of Immunology and Microbial Sciences, King's College London
- 4. The Alan Turing Institute; University of Manchester; Health Data Research UK
Description
Here we provide the colon mucosa single-cell IMC dataset which was used in our paper "Rarity: Discovering rare cell populations from single-cell imaging data". The file `colon_mucosa_dataset.csv` contains marker intensities for 40364 cells across 28 markers.
Additionally, `rarity_results.csv` contains the results from our Rarity analysis, including cluster indices and which cells were identified as double-negative T cells.
Files
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The record is publicly accessible, but files are restricted to users with access.
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Data made available initially for reviewer access only. Data will be made open access if the corresponding research study paper is accepted for publication.
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