peterjc/thapbi-pict: THAPBI PICT v1.0.20

Released on PyPI 2024-12-31:

https://pypi.org/project/thapbi-pict/1.0.20/

Script sample_filter.py now accepts multiple (classified) tally files. This can be used to pool multiple separate runs of the pipeline (e.g. one per plate).

Promoted MT065831.1 Phytophthora nicotianae in the default database to species level.

The helper scripts will now use rich-argparse if installed for more colorful command line help.

Fixed a scaling issue in the summary reports for large datasets.

Added SBATCH headers to the worked example run.sh scripts for use on a SLURM compute cluster.

Fixed some minor cross-platform and initial setup issues in the worked examples.