Published September 20, 2023 | Version v1.0.5
Software Open

suny-downstate-medical-center/netpyne: v1.0.5

Creators

  • 1. @Neurosim-lab
  • 2. University College London
  • 3. SUNY Downstate
  • 4. @EyeSeeTea
  • 5. Institute for Disease Modeling
  • 6. @MetaCell @openworm
  • 7. NYU Langone Health
  • 8. @MetaCell
  • 9. Nathan Kline Institute
  • 10. Metacell
  • 11. Poirazi Lab, IMBB, FORTH
  • 12. MetaCell

Description

Version 1.0.5

New features

  • Time series and PSD plots for current source density (CSD)

  • Added colorbar to CSD plot

  • Support for Sun Grid Engine HPC

  • Extended sim.gatherData() with more optional arguments for flexibility

  • Specify linear/log scale in plotRatePSD()

  • Print more info about exceptions in plotting functions

  • Check RxD specification for potential syntax issues

  • Prevent zero population size in scaled-down models

  • Better messages for validation errors

Bug fixes

  • Fixed errors in plotting with sim.cfg.gatherOnlySimData=True

  • Support saving and loading data in .mat and .hdf5 formats

  • Multiple fixes in plotRatePSD() - popColors, fft, minFreq

  • Fixed sync lines in plotRaster()

  • Fixed performance issue in plotConn() with groupBy='pop' (default)

  • Fixed recordTraces to not require more presicion than segment size (for stim and synMech)

Files

suny-downstate-medical-center/netpyne-v1.0.5.zip

Files (30.7 MB)

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md5:071a5c416b1a80aa2c2861067b390859
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Additional details

Related works

Is supplement to
https://github.com/suny-downstate-medical-center/netpyne/tree/v1.0.5 (URL)