nextstrain/nextclade: 1.10.1
Creators
- 1. Biozentrum, University of Basel
- 2. @neherlab @nextstrain
- 3. @Snyk
- 4. Nextstrain
- 5. University of North Carolina
- 6. University of Freiburg
- 7. ETH Zurich @cevo-public
- 8. University of Missouri
- 9. Faculty of Computer Science, Dalhousie University
- 10. The Francis Crick Institute
- 11. Fred Hutch - @blab
- 12. Fred Hutch
Description
Since version 1.10.0 Nextclade CLI have introduced a new required input file, virus_properties.json and datasets and documentation were updated to match. However, users who don't use datasets might have encountered breakage due to a missing file: when running Nextclade CLI without either --input-dataset of --input-virus-properties flag provided, it would stop with an unclear error message. In this release we improve the error message, making sure that that explains the problem and offers a solution.
This does not affect Nextclade Web or Nextalign CLI.
In order to facilitate upgrades, for most users, we recommend to:
- download the latest dataset before each Nextclade CLI session (e.g. in the beginning of an automated workflow, or once you start a batch of experiments manually) using
nextclade dataset getcommand - use
--input-datasetflag instead of individual--input-*flags for dataset files when issuingnextclade runcommand - if necessary, override some of the individual input files using corresponding
--input-*flags
virus_properties.json or --input-virus-properties to changelog
In the excitement of bringing the new features, we forgot to mention virus_properties.json or --input-virus-properties in the changelog when Nextclade CLI 1.10.0 was released. We now added this information retroactively.
Files
nextstrain/nextclade-1.10.1.zip
Files
(18.7 MB)
| Name | Size | Download all |
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md5:18d2f9138ae1b1e335623138c1c9e777
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Additional details
Related works
- Is supplement to
- https://github.com/nextstrain/nextclade/tree/1.10.1 (URL)