Published January 12, 2022 | Version v1
Dataset Open

Theoretical insights into the antiradical activity and copper-catalyzed oxidative damage of mexidol in the physiological environment

  • 1. University of Da Nang
  • 2. La Trobe University

Description

This dataset contains data from the calculations described in the paper: "Quan V. Vo*, Nguyen Thi Hoa, Mai Van Bay, Adam Mechler, Theoretical insights into the antiradical activity and copper-catalyzed oxidative damage of mexidol in the physiological environment. Royal Society Open Science. 2021.

In this study, the hydroperoxyl radical scavenging activity of MD was studied to establish baseline antioxidant activity, followed by an investigation of the effect of MD on the copper-catalyzed oxidative damage in biological systems, using computational methods. It was found that MD exhibits moderate radical scavenging activity against HOO· in physiological environments. The activity in aqueous solution is defined by the single electron transfer mechanism of the anion state; however in nonpolar environments the formal hydrogen transfer pathway dominates at the O3-H bond. It was also confirmed that MD can chelate Cu (II), forming complexes that are much harder to reduce than free Cu (II): MD chelation completely quenches the Cu (II) reduction by ascorbic acid and suppresses the rate of reduction reaction by O2·- that are the main reductants of Cu (II) in biological environments. Therefore, MD exerts its anti- HO· activity primarily as an OIL-1 inhibitor.

Notes

The readme file contains the calculation methods (Table S1, SI), the calculated Gibbs free energy of reactions between MD and [Cu(H2O)4]2+ in aqueous solution (Table S2, SI), the calculated BDE, PA, and IE (Table S3), the kinetic data (Table S4, SI), the calculated Gibbs free energy of reactions of the H2A+ with HOO· following the FHT and SET mechanisms in the aqueous solution (Table S5, SI), the Cartesian coordinates of the transition states and complexes (Table S6, SI) and optimized geometries the selected complexes in aqueous solution (Figure 1) in all the studied environments, th draft data and input files. Information on how the calculations were done can also be found in the associated manuscript referenced above.

Funding provided by: The Vietnamese Ministry of Education and Training*
Crossref Funder Registry ID:
Award Number: B2021-DNA-16

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README.txt

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Additional details

Related works

Is source of
10.5281/zenodo.5839166 (DOI)