Published December 31, 2021
| Version v1.0
Software
Open
PyloTiger: Compute TIGER Rates for Phylogenetic Data
Description
This is a pure Python implementation of the TIGER rates (Cummins and McInerney 2011), which can be computed for all kinds of phylogenetic data. The creation of the package was inspired by a study of Syrjänen et al. (2021) in which the authors present a new implementation of TIGER rate computation for linguistic purposes. Since the implementation by Syrjänen et al. does not come along as a package, but rather as a commandline tool, whose application from within Python scripts is not straightforward, I decided to reimplement the rate computation based on the description in both publications in the form of a small Python package without further dependencies.
Files
pylogeny/tiger-v1.0.zip
Files
(4.9 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/pylogeny/tiger/tree/v1.0 (URL)
- https://pypi.org/project/pylotiger (URL)