Published December 14, 2021
| Version 1.1.0
Software
Open
tskit-dev/msprime: Maintenance release integrating new tskit features
Creators
- Jerome Kelleher1
- Peter Ralph2
- Ben Jeffery3
- Dominic Nelson
- JereKoskela4
- Graham Gower5
- Yan Wong
- Jaime Ashander6
- Michael Matschiner7
- fbaumdicker8
- Joe Zhu
- Andrew Kern2
- Georgia Tsambos9
- Daniel Goldstein10
- Aaron Ragsdale
- Castedo Ellerman11
- Kevin R. Thornton12
- Bing Guo13
- Ariella Gladstein14
- Nik Baya
- Consuelo Quinto15
- Hugo van Kemenade16
- TPPSellinger
- Anthony Wilder Wohns17
- Nils Koelling
- Gertjan Bisschop
- Jared Galloway18
- 1. Big Data Institute
- 2. University of Oregon
- 3. Oxford University
- 4. University of Warwick
- 5. University of Copenhagen
- 6. UCLA / University of Oregon
- 7. Natural History Museum, University of Oslo
- 8. University of Tübingen
- 9. University of Melbourne
- 10. Broad Institute of MIT and Harvard
- 11. geneheritage.com
- 12. University of California Irvine
- 13. University of Maryland School of Medicine
- 14. Embarkvet
- 15. LANGEBIO
- 16. Nord Software
- 17. Broad Institute
- 18. Fred Hutch
Description
[1.1.0] - 2021-12-14
New features
- Add support for tree sequence time_units field. The time_units will be set to "generations" for the output of sim_ancestry (and simulate), unless the initial_state argument is used. In this case, the time_units value will be inherited from the input. (#1953, #1951, #1877, #1948, @jeromekelleher).
Raise an error if Demography.from_demes() is passed a model with non-zero selfing_rate or cloning_rate values (which msprime does not support). (#1938, #1937, @grahamgower).
Do not assume Population metadata schemas contain the properties and additionalProperties attributes (#1947, #1954, @jeromekelleher).
Read the population name from PopulationConfiguration metadata in Demography.from_old_style (#1950, #1954, @jeromekelleher)
- Update tskit to Python 0.4.0 and C 0.99.15.
Files
tskit-dev/msprime-1.1.0.zip
Files
(778.1 kB)
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Additional details
Related works
- Is supplement to
- https://github.com/tskit-dev/msprime/tree/1.1.0 (URL)