Published March 17, 2021
| Version v1
Journal article
Restricted
Stagonosporopsis rhizophilae sp. nov. (Didymellaceae, Pleosporales), a new rhizospheric soil fungus associated with Populus deltoides Marsh
- 1. State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, China. & Nanjing Forestry University, Nanjing, China. & Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou, China.
- 2. Instituto Hispano-Luso de Investigaciones Agrarias (CIALE), University of Salamanca, Calle del Duero, 12; 37185 Villamayor (Salamanca), Spain.
- 3. State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, China. & Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou, China.
Description
Wei, Huanshen, He, Xinghua, Riccardo, Baroncelli, Yang, Yuzhan, Yuan, Zhilin (2021): Stagonosporopsis rhizophilae sp. nov. (Didymellaceae, Pleosporales), a new rhizospheric soil fungus associated with Populus deltoides Marsh. Phytotaxa 491 (1): 23-34, DOI: 10.11646/phytotaxa.491.1.3, URL: http://dx.doi.org/10.11646/phytotaxa.491.1.3
Files
Restricted
The record is publicly accessible, but files are restricted to users with access.
Linked records
Additional details
Identifiers
- URL
- https://www.checklistbank.org/dataset/305264
- LSID
- urn:lsid:plazi.org:pub:FFE3FFC7FF834A276B24FFE55936205C
- URL
- http://publication.plazi.org/id/FFE3FFC7FF834A276B24FFE55936205C
References
- Aveskamp, M.M., De Gruyter, J., Woudenberg, J.H.C., Verkley, G.J.M. & Crous, P.W. (2010) Highlights of the Didymellaceae: a polyphasic approach to characterise phoma and related pleosporalean genera. Studies in Mycology 65: 1-60. https://doi.org/10.3114/sim.2010.65.01
- Aveskamp, M.M., Verkley, G.J.M., de Gruyter, J., Murace, M.A., Perello, A., Woudenberg, J.H.C., Groenewald, J.Z. & Crous, P.W. (2009) DNA phylogeny reveals polyphyly of Phoma section Peyronellaea and multiple taxonomic novelties. Mycologia 101: 363-382. https://doi.org/10.3852/08-199
- Boerema, G.H., De Gruyter, J., Noordeloos, M.E. & Hamers, M.E.C. (2004) Phoma identification manual-differentiation of specific and infra-specific taxa in culture. CABI Publishing, Wallingford, pp: 269-284. https://doi.org/10.1079/9780851997438.0000
- Boerema, G.H. & De Gruyter, J. (1999) Contributions towards a monograph of Phoma (Coelomycetes) III-Supplement.Additional species of section Plenodomus. Persoonia 17: 273-280.
- Boerema, G.H. (1997) Contributions towards a monograph of Phoma (Coelomycetes)-V. Subdivision of the genus in sections. Mycotaxon 64: 321-333.
- Boerema, G.H., De Gruyter, J. & Noordeloos, M.E. (1997) Contributions towards a monograph of Phoma (Coelomycetes)-IV. Section Heterospora: Taxa with large sized conidial dimorphs, in vivo sometimes as Stagonosporopsis synanamorphs. Persoonia 16: 335- 371.
- Boerema, G.H., De Gruyter, J. & Kesteren, H.A.V. (1994) Contributions towards a monograph of Phoma (Coelomycetes)-III. Section Plenodomus: Taxa often with a Leptosphaeria teleomorph. Persoonia 15: 431-487.
- Boerema, G.H. & Verhoeven, A.A. (1979) Check-list for scientific names of common parasitic fungi. Series 2c: fungi on field crops: pulse (legumes), and forage crops (herbage legumes). Netherlands Journal of Plant Pathology 85: 151-185. https://doi.org/10.1007/BF01976690
- Chen, Q., Hou, L.W., Duan, W.J., Crous, P.W. & Cai, L. (2017) Didymellaceae revisited. Studies in Mycology 87: 105-159. https://doi.org/10.1016/j.simyco.2017.06.002
- Chen, Q., Jiang, J.R., Zhang, G.Z., Cai, L. & Crous, P.W. (2015) Resolving the Phoma enigma. Studies in Mycology 82: 137-217. https://doi.org/10.1016/j.simyco.2015.10.003
- Chethana, K.W.T., Jayawardene, R.S., Zhang, W., Zhou, Y.Y., Liu, M., Hyde, K.D., Li, X.H., Wang, J., Zhang, K.C. & Yan, J.Y. (2019) Molecular characterization and pathogenicity of fungal taxa associated with cherry leaf spot disease. Mycosphere 10: 490-530. https://doi.org/10.5943/mycosphere/10/1/8
- Crous, P.W., Wingfield, M.J., Lombard, L., Roets, F., Swart, W.J., Alvarado, P., Carnegie, A.J., Moreno, G., Luangsa-ard, J., Thangavel, R., Alexandrova, A.V., Baseia, I.G., Bellanger, J.M., Bessette, A.E., Bessette, A.R., Delapena-Lastra, S., Garcia, D., Gene, J., Pham, T.H.G., Heykoop, M., Malysheva, E., Malysheva, V., Martin, M.P., Morozova, O.V., Noisripoom, W., Overton, B.E., Rea, A.E., Sewall, B.J., Smith, M.E., Smyth, C.W., Tasanathai, K., Visagie, C.M., Adamcik, S., Alves, A., Andrade, J.P., Aninat, M.J., Araujo, R.V.B., Bordallo, J.J., Boufleur, T., Baroncelli, R., Barreto, R.W., Bolin, J., Cabero, J., Cabon, M., Cafa, G., Caffot, M.L.H., Cai, L., Carlavilla, J.R., Chavez, R., Castro, R.R.L., Delgat, L., Deschuyteneer, D., Dios, M.M., Dominguez, L.S., Evans, H.C., Eyssartier, G., Ferreira, B.W., Figueiredo, C.N., Liu, F., Fournier, J., Galli-Terasawa, L.V., Gil-Duran, C., Glienke, C., Goncalves, M.F.M., Gryta, H., Guarro, J., Himaman, W., Hywel-Jones, N., Iturrieta-Gonzalez, I., Ivanushkina, N.E., Jargeat, P., Khalid, A.N., Khan, J., Kiran, M., Kiss, L., Kochkina, G.A., Kolarik, M., Kubatova, A., Lodge, D.J., Loizides, M., Luque, D., Manjon, J.L., Marbach, P.A.S., Massola, J.N.S., Mata, M., Miller, A.N., Mongkolsamrit, S., Moreau, P.A., Morte, A., Mujic, A., Navarro-Rodenas, A., Nemeth, M.Z., Nobrega, T.F., Novakova, A., Olariaga, I., Ozerskaya, S.M., Palma, M.A., Petters-Vandresen, D.A.L., Piontelli, E., Popov, E.S., Rodriguez, A., Requejo, O., Rodrigues, A.C.M., Rong, I.H., Roux, J., Seifert, K.A., Silva, B.D.B., Sklenar, F., Smith, J.A., Sousa, J.O., Souza, H.G., Souza, J.T., Svec, K., Tanchaud, P., Tanney, J.B., Terasawa, F., Thanakitpipattana, D., Torres-Garcia, D., Vaca, I., Vaghefi, N., Iperen, A.L., Vasilenko, O.V., Verbeken, A., Yilmaz, N., Zamora, J.C., Zapata, M., Jurjevic, Z. & Groenewald, J.Z. (2019) Fungal Planet description sheets: 951-1041. Persoonia 43: 223-425 (203). https://doi.org/10.3767/persoonia.2019.43.06
- De Gruyter, J., Aveskamp, M.M., Woudenberg, J.H.C., Verkley, G.J.M., Groenewald, J.Z. & Crous, P.W. (2009) Molecular phylogeny of Phoma and allied anamorph genera: towards a reclassification of the Phoma complex. Mycological Researc h 113: 508-519. https://doi.org/10.1016/j.mycres.2009.01.002
- De Gruyter, J., Noordeloos, M.E. & Boerema, G.H. (1993) Contributions towards a monograph of Phoma (Coelomycetes) I 2. Section Phoma: Additional taxa with very small conidia and taxa with conidia up to 7µm long. Persoonia 15: 369-400.
- Diedicke, H. (1912) Die Abteilung Hyalodidymae der Sphaerioideen. Annales Mycologici 10: 135-152.
- Dorenbosch, M.M.J. (1970) Key to nine ubiquitous soil-borne Phoma -like fungi. Persoonia 6: 1-14.
- Garampalli, R.H., Gapalkrishna, M.K., Li, H.X. & Brewer, M.T. (2016) Two Stagonosporopsis species identified as causal agents of gummy stem blight epidemics of gherkin cucumber (Cucumis sativus) in Karnataka, India. European Journal of Plant Pathology 145: 507-512. https://doi.org/10.1007/s10658-015-0841-2
- Hou, L., Hernandez-Restrepo, M., Groenewald, J.Z., Cai, L. & Crous, P.W. (2020a) Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes). MycoKeys 65: 49-99. https://doi.org/10.3897/mycokeys.65.47704
- Hou, L.W., Groenewald, J.Z., Pfenning, L.H., Yarden, O., Crous, P.W. & Cai, L. (2020b) The phoma-like dilemma. Studies in Mycology 96: 309-396. https://doi.org/10.1016/j.simyco.2020.05.001
- Huang, C.J. & Lai, Y.R. (2019) First report of Stagonosporopsis citrulli causing gummy stem blight of watermelon in Taiwan. Journal of Plant Pathology 101: 417. https://doi.org/10.1007/s42161-018-0192-x
- Hyde, K.D., Nilsson, R.H., Alias, S.A., Ariyawansa, H.A., Blair, J.E., Cai, L., de Cock, A.W.A.M., Dissanayake, A.J., Glockling, S.L., Goonasekara, I.D., Gorczak, M., Hahn, M., Jayawardena, R.S., van Kan, J.A.L., Laurence, M.H., Levesque, C.A., Li, X., Liu, J.K., Maharachchikumbura, S.S.N., Manamgoda, D.S., Martin, F.N., McKenzie, E.H.C., McTaggart, A.R., Mortimer, P.E., Nair, P.V.R., Pawlowska, J., Rintoul, T.L., Shivas, R.G., Spies, C.F.J., Summerell, B.A., Taylor, P.W.J., Terhem, R.B., Udayanga D, Vaghefi N, Walther G, Wilk, M., Wrzosek M, Xu, J.C., Yan, J.Y. & Zhou, N. (2014) One stop shop:backbones trees for important phytopathogenic genera: I. Fungal Diversity 67: 21-125. https://doi.org/10.1007/s13225-014-0298-1
- Jayasiri, S.C., Hyde, K.D., Jones, E.B.G., McKenzie, E.H.C., Jeewon, R., Phillips, A.J.L., Bhat, D.J., Wanasinghe, D.N., Liu, J.K., Lu, Y.Z., Kang, J.C., Xu, J. & Karunarathna, S.C. (2019) Diversity, morphology and molecular phylogeny of Dothideomycetes on decaying wild seed pods and fruits. Mycosphere 10: 1-186. https://doi.org/10.5943/mycosphere/10/1/1
- Jayawardena, R.S., Hyde, K.D., McKenzie, E.H.C. Ruvishika, S., Jeewon, R., Phillips, A.J.L., J. Oliveira-Filho, R.C., da Silva, N.I., Maharachchikumburua, S.S.N. Samarakoon, M.C., Ekanayake, A.H., Tennakoon, D.S., Dissanayake, A.J., Norphanphoun, C., Lin, C.G., Manawasinghe, I.S., Tian, Q., Brahmanage, R., Chomnunti, P., Hongsanan, S., Jayasiri, S.C. Halleen, F., Bhunjun, C.S., Karunarathna, A. &Wang, Y. (2019) One stop shop III: taxonomic update with molecular phylogeny for important phytopathogenic genera. Fungal Diversity 98: 77-160. https://doi.org/10.1007/s13225-019-00433-6
- Jeewon, R. & Hyde, K.D. (2016) Establishing species boundaries and new taxa among fungi: recommendations to resolve taxonomic ambiguities. Mycosphere 7: 1669-1677. https://doi.org/10.5943/mycosphere/7/11/4
- Li, P.F., Ren, R.S., Yao, X.F., Xu, J.H., Babu, B., Paret, M.L. & Yang, X.P. (2015) Identification and characterization of the causal agent of gummy stem blight from muskmelon and watermelon in east China. Journal of Phytopathology 163: 314-319. https://doi.org/10.1111/jph.12277
- Li, Y., Wang, Q., Mei, R.H. & Lu, G.Z. (2006) Phoma adonidicola sp. nov. on Adonis palaestina. Mycotaxon 98: 237-240.
- Li, Y., Zheng, C., Zhao, Z., Lu, G.Z., Fu, X.C., Mei, R.H., Li, J.Q. & Wang, Q. (2013) Characterization of Phoma adonidicola causing a spot blight on Adonis palaestina. European Journal of Plant Pathology 137: 127-136. https://doi.org/10.1007/s10658-013-0224-5
- Liu, Y.J., Whelen, S. & Hall, B.D. (1999) Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit. Molecular Biology and Evolution 16: 1799-1808. https://doi.org/10.1093/oxfordjournals.molbev.a026092
- Mancini, V., Murolo, S. & Romanazzi, G. (2016) Diagnostic methods for detecting fungal pathogens on vegetable seeds. Plant Pathology 65: 691-703. https://doi.org/10.1111/ppa.12515
- Marin-Felix, Y., Hernadez-Restrepo, M., Iturrieta-Gonzalez, I., Garcia, D., Gene, J., Groenwald, J.Z., Cai, L., Chen, Q., Quaedvlieg, W., Schumacher, R.K., Taylor, P.W.J., Ambers, C., Bonthond, G., Edwards, J., Krueger-Hadfield, S.A., Luangsa-ard, J.J., Morton, L., Moslemi, A. & Crous, P.W. (2019) Genera of phytopathogenic fungi: GOPHY3. Studies in Mycology 94: 1-124. https://doi.org/10.1016/j.simyco.2019.05.001
- Moumni, M., Mancini, V., Allagui, M.B., Murolo, S. & Romanazzi, G. (2019) Black rot of squash (Cucurbitamoschata) caused by Stagonosporopsis cucurbitacearum reported in Italy. Phytopathologia Mediterranea 58: 379-383. https://doi.org/10.14601/Phytopathol_Mediter-10624
- Noordeloos, M.E., De Gruyter, J., Eijk, G.W.V. & Roeijmans, H.J. (1993) Production of dendritic crystals in pure cultures of Phoma and Ascochyta and its value as a taxonomic character relative to morphology, pathology and cultural characteristics. Mycological Research 97: 1343-1350. https://doi.org/10.1016/S0953-7562(09)80168-8
- Nuangmek, W., Aiduang, W., Suwannarach, N., Kumla, J. & Lumyong, S. (2018) First report of gummy stem blight caused by Stagonosporopsis cucurbitacearum on cantaloupe in Thailand. Canadian Journal of Plant Pathology 40: 306-311. https://doi.org/10.1080/07060661.2018.1424038
- Nylander, J.A. (2004) MrModeltest V2. Program distributed by the author. Bioinformatics 25: 581-583. https://www.researchgate.net/publication/285805344
- Pethybridge, S.J., Hay, F.S., Esker, P.D., Gent, D.H., Wilson, C.R., Groom, T. & Nutter, F.W. (2008) Diseases of pyrethrum in Tasmania: challenges and prospects for management. Plant Disease 92: 1260-1272. https://doi.org/10.1094/PDIS-92-9-1260
- Qin, Y., Pan, X.Y., Christian, K., Irina, D., Komal, C., Labbe, J. & Yuan, Z.L. (2017) Diverse plant-associated pleosporalean fungi from saline areas: ecological tolerance and nitrogen-status dependent effects on plant growth. Frontiers in Microbiology 8: 1-14. https://doi.org/10.3389/fmicb.2017.00158
- Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572- 1574. https://doi.org/10.1093/bioinformatics/btg180
- Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690. https://doi.org/10.1093/bioinformatics/btl446
- Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology 57: 758-771. https://doi.org/10.1080/10635150802429642
- Stewart, J.E., Turner, A.N. & Brewer, M.T. (2015) Evolutionary history and variation in host range of three Stagonosporopsis species causing gummy stem blight of cucurbits. Fungal Biology 119: 370-382. https://doi.org/10.1016/j.funbio.2014.12.008
- Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011) MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Molecular Biology and Evolution 28: 2731-2739. https://doi.org/10.1093/molbev/msr121
- Vaghefi, N., Pethybridge, S., Ford, R., Nicolas, M., Crous, P. & Taylor, P.W.J. (2012) Stagonosporopsis spp. associated with ray blight disease of Asteraceae. Australasian Plant Pathology 41: 675-686. https://doi.org/10.1007/s13313-012-0161-3
- Vaghefi, N., Pethybridge, S.J., Hay, F.S., Ford, R., Nicolas, M.E. & Taylor, P.W.J. (2016) Revisiting Stagonosporopsis species associated with chrysanthemum and pyrethrum ray blight. Australasian Plant Pathology 45: 561-570. https://doi.org/10.1007/s13313-016-0446-z
- Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several cryptococcus species. Journal of Bacteriology 172: 4238-4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
- White, T.J., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.) PCR Protocols: a guide to methods and applications. Academic Press, San Diego, pp: 315-322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1