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Published October 28, 2021 | Version 2.1.1
Software Open

nf-core/ampliseq: Ampliseq Version 2.1.1

Creators

  • 1. QBiC
  • 2. Boehringer Ingelheim
  • 3. Linnaeus University & Stockholm University
  • 4. National Bioinformatics Infrastructure Sweden (NBIS)
  • 5. @qbicsoftware
  • 6. @SciLifeLab | Karolinska Institutet
  • 7. Science for Life Laboratory
  • 8. Seqera Labs

Description

nf-core/ampliseq version 2.1.1 - 2021-10-28 Summary of changes

This release fixes bugs.

Detailed changes Added
  • #336 - Taxa agglomeration levels with --dada_tax_agglom_min, --dada_tax_agglom_max, --qiime_tax_agglom_min, --qiime_tax_agglom_max, with defaults that go to genus level for abundance tables and ANCOM analysis
Changed
  • 338 - Write empty space instead of NA for missing values in output files.
  • 342 - Added PICRUSt2 to summary figure.
Fixed
  • #329 - Improve error message when no data files are found
  • #330 - Make --skip_fastqc usable again
  • #339 - Fix sample names when using --double_primer or --illumina_pe_its

Files

nf-core/ampliseq-2.1.1.zip

Files (3.5 MB)

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md5:81a1bbea48d4938ace29b4a09e3a8b31
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Additional details

Related works

Is supplement to
https://github.com/nf-core/ampliseq/tree/2.1.1 (URL)

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