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Published April 24, 2017 | Version v1.17.0
Software Open

broadinstitute/viral-ngs: v1.17.0

Authors/Creators

  • 1. Broad Institute
  • 2. Broad Institute of MIT and Harvard
  • 3. MIT
  • 4. DNAnexus

Description

New:

  • The functions to plot coverage in reports.py can now limit graph bounds via --plotXLimits and --plotYLimits
  • A function lane_metrics now exists in illumina.py to output cluster density for a run

Fixed:

  • Exception now avoided when two sequences do not overlap during multiple alignment/annotation transfer
  • Increase picard jvm memory for metagenomics deduplication
  • In snakemake metagenomics pipeline, fix the nodupes report incorrectly being dupes

Files

broadinstitute/viral-ngs-v1.17.0.zip

Files (46.3 MB)

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Additional details

Related works

Is supplement to
https://github.com/broadinstitute/viral-ngs/tree/v1.17.0 (URL)