Published February 13, 2022 | Version v1
Other Open

Genomic data support the taxonomic validity of Middle American livebearers Poeciliopsis gracilis and Poeciliopsis pleurospilus (Cyprinodontiformes: Poeciliidae)

  • 1. University of Oklahoma
  • 2. Field Museum of Natural History
  • 3. Southeastern Louisiana University

Description

Poeciliopsis (Cyprinodontiformes: Poeciliidae) is a genus comprised of 25 species of freshwater fishes. Several well-known taxonomic uncertainties exist within the genus, especially in relation to the taxonomic status of Poeciliopsis pleurospilus and P. gracilis. However, to date, no studies have been conducted to specifically address the taxonomic status of these two species. The goal of this study was to examine the taxonomic validity of P. pleurospilus and P. gracilis using genomic data (ddRADseq) in phylogenetic, population genetic, and species delimitation frameworks. Multiple analyses support the recognition of both taxa as distinct species and also permits us to revise their respective distributions. A species delimitation analysis indicates that P. pleurospilus and P. gracilis are distinct species from one another, each of which consists of two distinct lineages that are geographically structured. Phylogenetic and population genetic analyses demonstrate clear evidence that individuals of P. gracilis are distributed north and west of the Isthmus of Tehuantepec in both Pacific and Atlantic river systems in Mexico, whereas individuals of P. pleurospilus are distributed in both Atlantic and Pacific river systems south and east of the Isthmus of Tehuantepec, from southern Mexico to Honduras.

Notes

S1 Appendix. Laboratory Protocol.

S1 Fig. a-score optimization – spline interpolation.

S1 Table. Sampling localities of ingroup individuals.

S2 Appendix. ipyrad summary statistics.

S2 Table. Sampling localities of outgroup individuals.

S3 Appendix. Bioinformatic workflow.

S3 Table. Barcodes and batch information.

S4 Appendix. Treefile of phylogenetic inference.

S4 Table. Parameters used for assembly of concatenated dataset.

ingroup.recode - VCF file containing alignment of ingroup individuals. 

oneout.recode - VCF file containing alignment of ingroup individuals plus one outgroup specimen (Brachyrhaphis rhabdophora). 

Files

S1_Fig.tif

Files (239.8 kB)

Name Size Download all
md5:c7bb34237f54eaf7ad606174dbf429c0
23.3 kB Download
md5:0decfc80f8f7e487abdb63fc5f623d2b
81.3 kB Preview Download
md5:3d757a8a238f9e31a88ae86cad9bb02f
21.4 kB Download
md5:70839a84cf249a83564a66cb72001e66
46.6 kB Preview Download
md5:181b5e45de58c8f5c09894e25f3aba4a
18.0 kB Download
md5:768bd49f034e266bf98f3eeadf6a2116
28.7 kB Download
md5:0e00c269bf9c94f38e4017a6cd547acf
6.2 kB Download
md5:06c8f066d7f1f0d6954979b0838832f4
14.1 kB Download

Additional details

Related works

Is derived from
10.5061/dryad.mkkwh711m (DOI)