Published October 2, 2021
| Version v2.1.32.4
Software
Open
broadinstitute/viral-pipelines: v2.1.32.4
Authors/Creators
- 1. Broad Institute
- 2. Broad Institute of MIT and Harvard
- 3. MIT
- 4. @broadinstitute
- 5. Columbia University Medical Center
- 6. Aalborg University
- 7. Contractor at The Broad Institute
- 8. @gitlabhq
Description
new features:
- nextclade_version output string now includes nextclade datasets "tag" (version/date) [#371]
- implement nextclade_multi_sample and pangolin_multi_sample with Map task outputs, switch sarscov2_batch_relineage and sarscov2_illumina_full to use multi_sample pangolin and nextclade tasks to increase compute efficiency and reduce shard counts [#368]
bug fixes:
- rename detect_cross_contamination task wdl to be distinct from workflow name to fix dxWDL builds [#370]
vm/image updates:
- update pangolin 3.1.11 to 3.1.14, update pangolearn 2021-09-17 to 2021-09-28, update nextclade 1.2.3 to 1.4.0 [#371]
Files
broadinstitute/viral-pipelines-v2.1.32.4.zip
Files
(19.9 MB)
| Name | Size | Download all |
|---|---|---|
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md5:1feed7acaaf731c89831f35c5a3d2c5a
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19.9 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/broadinstitute/viral-pipelines/tree/v2.1.32.4 (URL)