Published September 28, 2021
| Version v2.1.32.3
Software
Open
broadinstitute/viral-pipelines: v2.1.32.3
Authors/Creators
- 1. Broad Institute
- 2. Broad Institute of MIT and Harvard
- 3. MIT
- 4. @broadinstitute
- 5. Columbia University Medical Center
- 6. Aalborg University
- 7. Contractor at The Broad Institute
- 8. @gitlabhq
Description
improvements:
sarscov2_biosample_loadworkflow: stop using today's date in constructing ftp directory path for NCBI BioSample submissions in order to allow call caching for jobs run on different days [#366]
bug fixes:
- fix for
Array[Array[String]] alertsoutput variable from vadr task (update to new vadr output format) [#363] - edge case bug fix for nextstrain subsampling keep_list (was always mangling the first entry of a user-specified keep list) [#364]
Broad-specific:
- add more external lab names to task
crsp_meta_etl[#367]
minor VM/docker changes:
- VM shape changes in nextstrain pipeline [#362]
- pangolearn image update [#365]
Files
broadinstitute/viral-pipelines-v2.1.32.3.zip
Files
(19.9 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:e16bc200453b72007e305fa878a03a65
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19.9 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/broadinstitute/viral-pipelines/tree/v2.1.32.3 (URL)