Published November 12, 2024 | Version 3.1.20241112140730
Software Open

common-workflow-language/cwltool: 3.1.20241112140730

Creators

  • 1. @common-workflow-language
  • 2. The University of Melbourne
  • 3. @CuriiHQ @arvados
  • 4. eScience lab, The University of Manchester
  • 5. Meta
  • 6. @common-workflow-language @NITDTERRATECHNICA
  • 7. @Xenserver
  • 8. Penn State University
  • 9. @Genomicsplc
  • 10. Bioinformation and DDBJ Center
  • 11. University of Edinburgh
  • 12. Red Hat
  • 13. Cincinnati Children's Hospital Medical Center
  • 14. Ginkgo Bioworks
  • 15. IBM
  • 16. BSC-CNS
  • 17. @altos-labs
  • 18. Anduril Industries
  • 19. Institut Pasteur
  • 20. Barcelona Supercomputing Center
  • 21. spotify
  • 22. @OICR_news

Description

What's Changed

  • use max_cores in taskQueue instead of system cores by @kmavrommatis in https://github.com/common-workflow-language/cwltool/pull/2038

  • Use "run" with singularity/apptainer instead of "exec", when possible by @sameeul in https://github.com/common-workflow-language/cwltool/pull/2065

  • add note on docker macOS platform issue by @Brilator in https://github.com/common-workflow-language/cwltool/pull/2064

  • cpu_count can be None, so fallback to 1 by @mr-c in https://github.com/common-workflow-language/cwltool/pull/2063

  • conformance testing: no longer skip tests for singularity/apptainer by @mr-c in https://github.com/common-workflow-language/cwltool/pull/2067

  • cibuildwheel: adjust pytest parallel execution ; drop musllinux_1_1 by @mr-c in https://github.com/common-workflow-language/cwltool/pull/2061

Deps

  • Update ruamel-yaml requirement from <0.18,>=0.16.0 to >=0.16.0,<0.19 by @dependabot in https://github.com/common-workflow-language/cwltool/pull/2066
  • Update flake8-bugbear requirement from <24.9 to <24.11 by @dependabot in https://github.com/common-workflow-language/cwltool/pull/2062

New Contributors

  • @Brilator made their first contribution in https://github.com/common-workflow-language/cwltool/pull/2064
  • @kmavrommatis made their first contribution in https://github.com/common-workflow-language/cwltool/pull/2038
  • @sameeul made their first contribution in https://github.com/common-workflow-language/cwltool/pull/2065

Full Changelog: https://github.com/common-workflow-language/cwltool/compare/3.1.20241024121129...3.1.20241112140730

Files

common-workflow-language/cwltool-3.1.20241112140730.zip

Files (1.8 MB)

Additional details

Related works

Is supplement to
Software: https://github.com/common-workflow-language/cwltool/tree/3.1.20241112140730 (URL)