Published November 15, 2024
| Version 2.12.0
Software
Open
nf-core/ampliseq: Ampliseq Version 2.12.0
Creators
- Daniel Straub1
- Jeanette Tångrot2
- Alexander Peltzer3
- Daniel Lundin4
- emnilsson
- nf-core bot
- Sateesh_Peri5
- Adam Bennett6
- John Sundh7
- DiegoBrambilla
- Asaf Peer8
- Till E.9
- Lokeshwaran Manoharan10
- Maxime U Garcia11
- Sam Minot12
- Dan Clayton13
- Gisela Gabernet
- Venkat Malladi
- Harshil Patel14
- PhilPalmer
- Daniel Vaulot15
- Phil Ewels11
- Colin Davenport
- Danilo Di Leo
- Matthias Hörtenhuber16
- dariader
- Kevin Menden17
- 1. QBiC
- 2. National Bioinformatics Infrastructure Sweden (NBIS)
- 3. Boehringer Ingelheim
- 4. Linnaeus University & Stockholm University
- 5. PeriMatrix IT Consultancy
- 6. Minderoo Foundation
- 7. @NBISweden
- 8. HUJI
- 9. QBiC @qbicsoftware
- 10. Lund University
- 11. @seqeralabs
- 12. @FredHutch
- 13. STFC Hartree Centre
- 14. Seqera
- 15. CNRS, Station Biologique
- 16. @ScilifelabDataCentre
- 17. Robert Bosch GmbH
Description
nf-core/ampliseq version 2.12.0 - 2024-11-15
Summary of changes
- updated some reference databases
- several bug fixes
- updated to nf-core template 3.0.2
- dependency updates
Detailed changes
Added
- #786 - Added version 20240904 of Kraken2 standard taxonomy database:
standard=20240904orstandardas parameter to--kraken2_ref_taxonomy
Changed
- #785 - replaced https://data.ace.uq.edu.au/public/gtdb/data by https://data.gtdb.ecogenomic.org for GTDB versions via
--dada_ref_taxonomy
Fixed
- #785,#795 - Template update for nf-core/tools version 3.0.2
- #786 - Creation of the summary report was failing with
--dada_ref_taxonomy silva=132 - #792 - Remove white spaces in process tags to avoid errors on some systems
Dependencies
| software | previously | now | | -------- | ---------- | ------ | | MultiQC | 1.21 | 1.25.1 | | Kraken2 | 2.1.2 | 2.1.3 | | Picrust2 | 2.5.2 | 2.5.3 |
Files
nf-core/ampliseq-2.12.0.zip
Files
(1.7 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:b0857ecb0a780d27237864630656c7dc
|
1.7 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/nf-core/ampliseq/tree/2.12.0 (URL)