Published September 13, 2021 | Version 2.7.0
Software Open

ellisztamas/faps: Human-readable summary of paternity of individual progeny

Creators

  • 1. Gregor Mendel Institute

Description

Added function to return human readable results about the top candidate fathers for each individual offspring in the data set. This essentially a summary function for sibshipCluster.posterior_paternity_matrix().

  • Added method paternity to sibshipCluster objects to return a table for that halfsib array only giving the IDs of the mother, offspring, and the N candidate fathers with the highest posterior paternity, along with those probabilities.
  • To do this I needed to update sibshipCluster to inherit offspring names from paternityArray objects.
  • Renamed sibshipCluster.prob_paternity to the more intuitive posterior_paternity_matrix

Files

ellisztamas/faps-2.7.0.zip

Files (8.2 MB)

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Additional details

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