Biodiversity Literature Repository
Published October 31, 2016 | Version v1
Journal article Restricted

Uncovering species boundaries in the Neotropical ant complex Ectatomma ruidum (Ectatomminae) under the presence of nuclear mitochondrial paralogues

Creators

Description

Aguilar-Velasco, Reina Gabriela, Poteaux, Chantal, Meza-Lazaro, Rubi, Lachaud, Jean-Paul, Dubovikoff, Dmitry, Zaldivar-Riveron, Alejandro (2016): Uncovering species boundaries in the Neotropical ant complex Ectatomma ruidum (Ectatomminae) under the presence of nuclear mitochondrial paralogues. Zoological Journal of the Linnean Society 178 (2): 226-240, DOI: 10.1111/zoj.12407, URL: https://academic.oup.com/zoolinnean/article-lookup/doi/10.1111/zoj.12407

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:0B0AFFB92829FFB9FF8CFFC2FFB3FFC8

Related works

Has part
Figure: 10.5281/zenodo.5367261 (DOI)
Figure: 10.5281/zenodo.5367264 (DOI)
Figure: 10.5281/zenodo.5367266 (DOI)
Figure: 10.5281/zenodo.5367268 (DOI)

References

  • Avise JC. 2000. Phylogeography. The history and formation of species. Cambridge, MA: Harvard University Press.
  • Bensasson D, Zhang DX, Hartl DL, Hewitt GM. 2001. Mitochondrial pseudogenes: evolution's misplaced witnesses. Trends in Ecology and Evolution 16: 314-321.
  • Bolton B 2015. AntWeb. Available from: https://www.antweb. org/description.do?rank=species&genus=Ectatomma&name= ruidum&project=. Accessed 5 September 2015.
  • Breed MD, Abel P, Bleuze TJ, Denton SE. 1990. Thievery, home ranges, and nestmate recognition in Ectatomma ruidum. Oecologia 84: 117-121.
  • Breed MD, Snyder LE, Lynn TL, Morhart JA. 1992. Acquired chemical camouflage in a tropical ant. Animal Behaviour 44: 519-523.
  • Breed MD, McGlynn TP, Stocker EM, Klein AN. 1999. Thief workers and variation in nestmate recognition behavior in a ponerine ant, Ectatomma ruidum. Insectes Sociaux 46: 327-331.
  • Bryson RW Jr, Smith BT, Nieto-Montes de Oca A, Garcia-Vazquez UO, Riddle BR. 2014. The role of mitochondrial introgression in illuminating the evolutionary history of Nearctic treefrogs. Zoological Journal of the Linnean Society 172: 103-116.
  • Calvignac S, Konecny L, Malard F, Douady CJ. 2011. Preventing the pollution of mitochondrial datasets with nuclear mitochondrial paralogues (numts). Mitochondrion 11: 246-254.
  • Colgan DJ, McLauchlan A, Wilson GDF, Livingston SP, Edgecombe GD, Macaranas J, Cassis G, Gray MR. 1998. Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution. Australian Journal of Zoology 46: 419-437.
  • Cristiano MP, Cardoso DC, Fernandes-Salom ao ~ TM. 2014. Could pseudogenes be widespread in ants? Evidence of numts in the leafcutter and Acromyrmex striatus (Roger, 1863) (Formicidae: Attini). Comptes Rendus Biologies 337: 78-85.
  • Cupul-Maga na ~ FG. 2009. Primera observacion del comportamiento defensivo por muerte simulada de la hormiga Ectatomma ruidum (Roger, 1861) (Formicidae: Ponerinae). Acta Zoologica Mexicana 25: 199-201.
  • Darriba D, Taboada GL, Doallo R, Posada D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9: 772.
  • De Queiroz K. 2007. Species concepts and species delimitation. Systematic Biology 56: 879-886.
  • Emery C. 1901. Notes sur les sous-familles des Dorylines et Ponerines (Famille des Formicides). Annales de la Societe Entomologique de Belgique 45: 32-54.
  • Fernandez F. 1991. Las hormigas cazadoras del genero Ectatomma (Formicidae: Ponerinae) en Colombia. Caldasia 16: 551-564.
  • Ferreira RS, Poteaux C, Delabie JHC, Fresneau D, Rybak F. 2010. Stridulations reveal cryptic speciation in Neotropical sympatric ants. PLoS ONE 5: e15363.
  • Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3: 294-299.
  • Funk DJ, Omland KE. 2003. Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annual Review of Ecology, Evolution and Systematics 34: 397-423.
  • Gallegos-Aguirre B. 1998. Identificacion del congenere en la hormiga Ectatomma ruidum (Hymenoptera, Ponerinae): analisis de los hidrocarburos cuticulares. Tesis de Licenciatura en Quimica-Farmacobiologia. Tapachula: Universidad Autonoma de Chiapas y Escuela de Ciencias Quimicas.
  • Guenard B, McGlynn TP. 2013. Intraspecific thievery in the ant Ectatomma ruidum is mediated by food availability. Biotropica 45: 497-502.
  • Hebert PDN, Cywinska A, Ball SL, deWaard JR. 2003. Biological identifications through DNA barcodes. Proceedings of the Royal Society of London B, Biological Sciences 270: 313-321.
  • Ibrahim KM, Cooper SJB, Hewitt GM. 2002. Testing for recombination in a short nuclear DNA sequence of the European meadow grasshopper, Chorthippus parallelus. Molecular Ecology 11: 583-590.
  • Jermiin LS, Crozier RH. 1994. The cytochrome b region in the mitochondrial DNA of the ant Tetraponera rufoniger: sequence divergence in Hymenoptera may be associated with nucleotide content. Journal of Molecular Evolution 38: 282-294.
  • Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16: 111-120.
  • Kronauer DJC, Sch oning € C, Vilhelmsen LB, Boomsma JJ. 2007. A molecular phylogeny of Dorylus army ants provides evidence for multiple evolutionary transitions in foraging niche. BMC Evolutionary Biology 7: 56.
  • Kugler C, Brown WL Jr. 1982. Revisionary & other studies on the ant genus Ectatomma, including the descriptions of two new species. Search. Agriculture 24: 1-8.
  • Lachaud J-P. 1990. Foraging activity and diet in some Neotropical ponerine ants I. Ectatomma ruidum Roger (Hymenoptera Formicidae). Folia Entomologica Mexicana 78: 241-256.
  • Lachaud J-P, Perez-Lachaud G. 2015. Ectaheteromorph ants also host highly diverse parasitic communities: a review of the parasitoids of the Neotropical genus Ectatomma. Insectes Sociaux 62: 121-132.
  • Lachaud J-P, Cadena A, Schatz B, Perez-Lachaud G, Ibarra-Nu nez ~ G. 1999. Queen dimorphism and reproductive capacity in the ponerine ant, Ectatomma ruidum Roger. Oecologia 120: 515-523.
  • Leite LAR. 2012. Mitochondrial pseudogenes in insect DNA barcoding: differing points of view on the same issue. Biota Neotropica 12: 301-308.
  • Lin CP, Danforth BN. 2004. How do insect nuclear and mitochondrial gene substitution patterns differ? Insights from Bayesian analyses of combined datasets. Molecular Phylogenetics and Evolution 30: 686-702.
  • Maddison WP, Maddison DR. 2009. Mesquite: a modular system for evolutionary analysis. Version 2.7. http:// mesquiteproject.org.
  • Magnacca KN, Brown MJF. 2010. Mitochondrial heteroplasmy and DNA barcoding in Hawaiian Hylaeus (Nesoprosopis) bees (Hymenoptera: Colletidae). BMC Evolutionary Biology 10: 174.
  • Martins J Jr, Solomon SE, Mikheyev AS, Mueller UG, Ortiz A, Bacci M Jr. 2007. Nuclear mitochondrial-like sequences in ants: evidence from Atta cephalotes (Formicidae: Attini). Insect Molecular Biology 16:777-784.
  • Milit ao ~ T, Gomez-Diaz E, Kaliontzopoulou A, Gonzalez- Solis J. 2014. Comparing multiple criteria for species identification in two recently diverged seabirds. PLoS ONE 9: e115650.
  • Milne I, Lindner D, Bayer M, Husmeier D, McGuire G, Marshall DF, Wright F. 2009. TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics 25: 126-127.
  • Moreau CS, Bell CD, Vila R, Archibald SB, Pierce NE. 2006. Phylogeny of the ants: diversification in the age of angiosperms. Science 312: 101-104.
  • Nettel-Hernanz A, Lachaud J-P, Fresneau D, Lopez- Mu noz ~ RA, Poteaux C. 2015. Biogeography, cryptic diversity, and queen dimorphism evolution of the Neotropical ant genus Ectatomma Smith 1958 (Formicidae: Ectatomminae). Organisms Diversity & Evolution 15: 543-553.
  • Padial JM, Miralles A, De la Riva I, Vences M. 2010. The integrative future of taxonomy. Frontiers in Zoology 7: 16.
  • Palumbi SR, Cipriano F, Hare MP. 2001. Predicting nuclear gene coalescence from mitochondrial data: the three-times rule. Evolution 55: 859-868.
  • Pamilo P, Viljakainen L, Vihavainen A. 2007. Exceptionally high density of NUMTs in the honeybee genome. Molecular Biology and Evolution 24: 1340-1346.
  • Pedraza-Lara C, Barrientos-Lozano L, Rocha-Sanchez AY, Zaldivar-Riveron A. 2015. Montane and coastal species diversification in the economically important Mexican grasshopper genus Sphenarium (Orthoptera: Pyrgomorphidae). Molecular Phylogenetics and Evolution 84: 220-231.
  • Perez-Lachaud G, Heraty JM, Carmichael A, Lachaud J-P. 2006. Biology and behavior of Kapala (Hymenoptera: Eucharitidae) attacking Ectatomma, Gnamptogenys, and Pachycondyla (Formicidae: Ectatomminae and Ponerinae) in Chiapas, Mexico. Annals of the Entomological Society of America 99: 567-576.
  • Pons J, Barraclough TG, Gomez-Zurita J, Cardoso A, Duran DP, Hazell S, Kamoun S, Sumlin WD, Vogler AP. 2006. Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Systematic Biology 55: 595-609.
  • Posada D, Crandall KA. 2002. The effect of recombination on the accuracy of phylogeny estimation. Journal of Molecular Evolution 54: 396-402.
  • Roger J. 1860. Die Ponera-artigen Ameisen. Berliner Entomologische Zeitschrift 4: 278-312.
  • Rokas A, Melika G, Abe Y, Nieves-Aldrey JL, Cook JM, Stone GN. 2003. Lifecycle closure, lineage sorting, and hybridization revealed in a phylogenetic analysis of European oak gallwasps (Hymenoptera: Cynipidae: Cynipini) using mitochondrial sequence data. Molecular Phylogenetics and Evolution 26: 36-45.
  • Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, H ohna € S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61: 539-542.
  • Ross KG, Gotzek D, Ascunce MS, Shoemaker DD. 2010. Species delimitation: a case of study in a problematic ant taxon. Systematic Biology 59: 162-184.
  • Schatz B, Lachaud J-P, Beugnon G. 1995. Spatial fidelity and individual foraging specializations in the Neotropical ponerine ant Ectatomma ruidum Roger (Hymenoptera; Formicidae). Sociobiology 26: 269-282.
  • Schatz B, Lachaud J-P, Beugnon G. 1996. Polyethism within hunters of the ponerine ant, Ectatomma ruidum Roger (Formicidae, Ponerinae). Insectes Sociaux 43: 111- 118.
  • Schlick-Steiner BC, Steiner FM, Moder K, Seifert B, Sanetra M, Dyreson E, Stauffer C, Christian E. 2006. A multidisciplinary approach reveals cryptic diversity in Western Palearctic Tetramorium ants (Hymenoptera: Formicidae). Molecular Phylogenetics and Evolution 40: 259-273.
  • Schlick-Steiner BC, Steiner FM, Seifert B, Stauffer C, Christian E, Crozier RH. 2010. Integrative taxonomy: a multisource approach to exploring biodiversity. Annual Review of Entomology 55: 421-438.
  • Seifert B. 2009. Cryptic species in ants (Hymenoptera: Formicicdae) revisited: we need a change in the alpha-taxonomic approach. Myrmecological News 12: 149-166.
  • Simmons RB, Weller SJ. 2001. Utility and evolution of cytochrome b in insects. Molecular Phylogenetics and Evolution 20: 196-210.
  • Simon C, Frati F, Beckenbach A, Crespi B, Liu H, Flook P. 1994. Evolution, weighting and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Annals of the Entomological Society of America 87: 651-701.
  • Smith MA, Hallwachs W, Janzen DH. 2014. Diversity and phylogenetic community structure of ants along a Costa Rican elevational gradient. Ecography 37: 720-731.
  • Song H, Buhay JE, Whiting MF, Crandall KA. 2008. Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified. Proceedings of the National Academy of Sciences USA 105: 13486-13491.
  • Song H, Moulton MJ, Whiting MF. 2014. Rampant nuclear insertion of mtDNA across diverse lineages within Orthoptera (Insecta). PLoS ONE 9: e110508.
  • Talavera G, Dinca V, Vila R. 2013. Factors affecting species delimitations with the GMYC model: insights from a butterfly survey. Methods in Ecology and Evolution 4: 1101-1110.
  • 2013. MEGA6: molecular evolutionary genetics analysis ver-
  • sion 6.0. Molecular Biology and Evolution 30: 2725-2729.
  • Wiens JJ, Penkrot TA. 2002. Delimiting species using DNA
  • Wild AL. 2009. Evolution of the Neotropical ant genus Linepithema. Systematic Entomology 34: 49-62.
  • Wiley EO. 1978. The evolutionary species concept reconsid-
  • Zarza E, Reynoso VH, Emerson BC. 2008. Diversification in the northern neotropics: mitochondrial and nuclear DNA phylogeography of the iguana Ctenosaura pectinata and related species. Molecular Ecology 17: 3259-3275.

This site uses cookies. Find out more on how we use cookies