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Published August 20, 2021 | Version v2.0.0
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jtnystrom/Discount: Version 2.0.0

  • 1. JNP Solutions, Lifematics

Description

This version includes the following improvements.

  • Nearly 50% faster counting due to better algorithms, including a version of radix sort from the Fastutil library
  • Automatic selection of the most appropriate minimizer set from a directory, by matching with the desired (k, m) values
  • Support for interactive notebooks (a Zeppelin example is included) and a restructured API to support this
  • Hashed superkmers can now be queried by sequences to find matching k-mers
  • Support for lowercase nucleotide letters in input
  • Support for user-defined minimizer orderings (-o given)
  • Various simplifications and enhancements

Files

jtnystrom/Discount-v2.0.0.zip

Files (4.1 MB)

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Additional details

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