Published August 20, 2021
| Version v2.0.0
Software
Open
jtnystrom/Discount: Version 2.0.0
Description
This version includes the following improvements.
- Nearly 50% faster counting due to better algorithms, including a version of radix sort from the Fastutil library
- Automatic selection of the most appropriate minimizer set from a directory, by matching with the desired (k, m) values
- Support for interactive notebooks (a Zeppelin example is included) and a restructured API to support this
- Hashed superkmers can now be queried by sequences to find matching k-mers
- Support for lowercase nucleotide letters in input
- Support for user-defined minimizer orderings (-o given)
- Various simplifications and enhancements
Files
jtnystrom/Discount-v2.0.0.zip
Files
(4.1 MB)
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md5:43cae2e3f5b2b64d0b07fc8fcb303acd
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Additional details
Related works
- Is supplement to
- https://github.com/jtnystrom/Discount/tree/v2.0.0 (URL)